Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MO982_RS23650 Genome accession   NZ_CP093966
Coordinates   5089575..5090000 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain ATCC BAA-2114     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5084575..5095000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO982_RS23635 (MO982_23630) pilX 5085145..5085732 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  MO982_RS23640 (MO982_23635) pilY1 5085744..5089229 (+) 3486 WP_093976288.1 type 4a pilus biogenesis protein PilY1 -
  MO982_RS23645 (MO982_23640) pilY2 5089231..5089578 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  MO982_RS23650 (MO982_23645) comF 5089575..5090000 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  MO982_RS23655 (MO982_23650) ispH 5090047..5090991 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MO982_RS23660 (MO982_23655) fkpB 5091077..5091517 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  MO982_RS23665 (MO982_23660) lspA 5091510..5092019 (-) 510 WP_003110420.1 signal peptidase II -
  MO982_RS23670 (MO982_23665) ileS 5092012..5094843 (-) 2832 WP_093976289.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=573311 MO982_RS23650 WP_003094721.1 5089575..5090000(+) (comF) [Pseudomonas aeruginosa strain ATCC BAA-2114]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=573311 MO982_RS23650 WP_003094721.1 5089575..5090000(+) (comF) [Pseudomonas aeruginosa strain ATCC BAA-2114]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383