Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | KM402_RS18890 | Genome accession | NZ_CP076178 |
| Coordinates | 3644065..3644844 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain BUL 12 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3609743..3683668 | 3644065..3644844 | within | 0 |
Gene organization within MGE regions
Location: 3609743..3683668
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KM402_RS18740 (KM402_18760) | - | 3610087..3611757 (-) | 1671 | WP_000823085.1 | ribonuclease J | - |
| KM402_RS18745 (KM402_18765) | dapA | 3612523..3613401 (-) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| KM402_RS18750 (KM402_18770) | dapG | 3613413..3614645 (-) | 1233 | WP_000692470.1 | aspartate kinase | - |
| KM402_RS18755 (KM402_18775) | asd | 3614669..3615715 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| KM402_RS18760 (KM402_18780) | dpaB | 3615866..3616465 (-) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| KM402_RS18765 (KM402_18785) | dpaA | 3616462..3617364 (-) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| KM402_RS18770 (KM402_18790) | - | 3617639..3617890 (-) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| KM402_RS18775 (KM402_18795) | - | 3618017..3619258 (-) | 1242 | WP_000592993.1 | pitrilysin family protein | - |
| KM402_RS18780 (KM402_18800) | - | 3619345..3620244 (-) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| KM402_RS18785 (KM402_18805) | pnp | 3620396..3622534 (-) | 2139 | WP_000076750.1 | polyribonucleotide nucleotidyltransferase | - |
| KM402_RS18790 (KM402_18810) | rpsO | 3622695..3622964 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| KM402_RS18795 (KM402_18815) | ribF | 3623065..3624036 (-) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| KM402_RS18800 (KM402_18820) | truB | 3624080..3625003 (-) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| KM402_RS18805 (KM402_18825) | rbfA | 3625090..3625446 (-) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| KM402_RS18810 (KM402_18830) | - | 3625462..3625743 (-) | 282 | WP_000582364.1 | DUF503 family protein | - |
| KM402_RS18815 (KM402_18835) | infB | 3625740..3627800 (-) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| KM402_RS18820 (KM402_18840) | - | 3627805..3628116 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| KM402_RS18825 (KM402_18845) | - | 3628117..3628389 (-) | 273 | WP_000071128.1 | YlxR family protein | - |
| KM402_RS18830 (KM402_18850) | nusA | 3628401..3629507 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| KM402_RS18835 (KM402_18855) | rimP | 3629525..3629995 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| KM402_RS18840 (KM402_18860) | - | 3630328..3634629 (-) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| KM402_RS18845 (KM402_18865) | - | 3634754..3636454 (-) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| KM402_RS18850 (KM402_18870) | rseP | 3636564..3637820 (-) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| KM402_RS18855 (KM402_18875) | dxr | 3637837..3638979 (-) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| KM402_RS18860 (KM402_18880) | cdsA | 3639003..3639794 (-) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| KM402_RS18865 (KM402_18885) | uppS | 3639812..3640588 (-) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| KM402_RS18870 (KM402_18890) | frr | 3640674..3641231 (-) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| KM402_RS18875 (KM402_18895) | pyrH | 3641234..3641956 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| KM402_RS18880 (KM402_18900) | tsf | 3642023..3642910 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| KM402_RS18885 (KM402_18905) | rpsB | 3643014..3643715 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| KM402_RS18890 (KM402_18910) | codY | 3644065..3644844 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| KM402_RS18895 (KM402_18915) | hslU | 3644922..3646313 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| KM402_RS18900 (KM402_18920) | hslV | 3646336..3646878 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| KM402_RS18905 (KM402_18925) | xerC | 3646921..3647820 (-) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| KM402_RS18910 (KM402_18930) | trmFO | 3647886..3649190 (-) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| KM402_RS18915 (KM402_18935) | topA | 3649241..3651319 (-) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| KM402_RS18920 (KM402_18940) | dprA | 3651464..3652332 (-) | 869 | Protein_3695 | DNA-processing protein DprA | - |
| KM402_RS18925 (KM402_18945) | sucD | 3652420..3653322 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| KM402_RS18930 (KM402_18950) | sucC | 3653343..3654503 (-) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| KM402_RS18935 (KM402_18955) | rnhB | 3654697..3655470 (-) | 774 | WP_017651024.1 | ribonuclease HII | - |
| KM402_RS18940 (KM402_18960) | ylqF | 3655522..3656412 (-) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| KM402_RS18945 (KM402_18965) | lepB | 3656433..3656984 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| KM402_RS18950 (KM402_18970) | rplS | 3657086..3657430 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| KM402_RS18955 (KM402_18975) | trmD | 3657577..3658311 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| KM402_RS18960 (KM402_18980) | rimM | 3658311..3658826 (-) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| KM402_RS18965 (KM402_18985) | - | 3658947..3659174 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| KM402_RS18970 (KM402_18990) | rpsP | 3659189..3659461 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| KM402_RS18975 (KM402_18995) | ffh | 3659562..3660911 (-) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| KM402_RS18980 (KM402_19000) | - | 3660924..3661256 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| KM402_RS18985 (KM402_19005) | ftsY | 3661391..3662380 (-) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| KM402_RS18990 (KM402_19010) | smc | 3662396..3665965 (-) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| KM402_RS18995 (KM402_19015) | rncS | 3666112..3666849 (-) | 738 | WP_017651025.1 | ribonuclease III | - |
| KM402_RS19000 (KM402_19020) | acpP | 3666908..3667141 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| KM402_RS19005 (KM402_19025) | fabG | 3667211..3667951 (-) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| KM402_RS19010 (KM402_19030) | fabD | 3667951..3668895 (-) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| KM402_RS19015 (KM402_19035) | plsX | 3668910..3669902 (-) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| KM402_RS19020 (KM402_19040) | fapR | 3669899..3670492 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| KM402_RS19025 (KM402_19045) | recG | 3670581..3672629 (-) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| KM402_RS19030 (KM402_19050) | - | 3672919..3674595 (-) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| KM402_RS19035 (KM402_19055) | - | 3674618..3674980 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| KM402_RS19040 (KM402_19060) | rpmB | 3675359..3675547 (+) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| KM402_RS19045 (KM402_19065) | spoVM | 3675620..3675700 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| KM402_RS19050 (KM402_19070) | - | 3675767..3676447 (-) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| KM402_RS19055 (KM402_19075) | rpe | 3676547..3677191 (-) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| KM402_RS19060 (KM402_19080) | rsgA | 3677194..3678075 (-) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| KM402_RS19065 (KM402_19085) | prkC | 3678344..3680317 (-) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| KM402_RS19070 (KM402_19090) | - | 3680326..3681078 (-) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| KM402_RS19075 (KM402_19095) | rlmN | 3681083..3682171 (-) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| KM402_RS19080 (KM402_19100) | rsmB | 3682176..3683510 (-) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=573058 KM402_RS18890 WP_000421288.1 3644065..3644844(-) (codY) [Bacillus anthracis strain BUL 12]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=573058 KM402_RS18890 WP_000421288.1 3644065..3644844(-) (codY) [Bacillus anthracis strain BUL 12]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |