Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KM412_RS18885 Genome accession   NZ_CP076160
Coordinates   3644248..3645027 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus anthracis strain 4-IZSLT     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3639248..3650027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM412_RS18860 (KM412_18875) uppS 3639995..3640771 (-) 777 WP_000971303.1 isoprenyl transferase -
  KM412_RS18865 (KM412_18880) frr 3640857..3641414 (-) 558 WP_000531503.1 ribosome recycling factor -
  KM412_RS18870 (KM412_18885) pyrH 3641417..3642139 (-) 723 WP_000042663.1 UMP kinase -
  KM412_RS18875 (KM412_18890) tsf 3642206..3643093 (-) 888 WP_001018581.1 translation elongation factor Ts -
  KM412_RS18880 (KM412_18895) rpsB 3643197..3643898 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  KM412_RS18885 (KM412_18900) codY 3644248..3645027 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KM412_RS18890 (KM412_18905) hslU 3645105..3646496 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  KM412_RS18895 (KM412_18910) hslV 3646519..3647061 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  KM412_RS18900 (KM412_18915) xerC 3647104..3648003 (-) 900 WP_001101226.1 tyrosine recombinase XerC -
  KM412_RS18905 (KM412_18920) trmFO 3648069..3649373 (-) 1305 WP_003161605.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=572729 KM412_RS18885 WP_000421288.1 3644248..3645027(-) (codY) [Bacillus anthracis strain 4-IZSLT]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=572729 KM412_RS18885 WP_000421288.1 3644248..3645027(-) (codY) [Bacillus anthracis strain 4-IZSLT]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459