Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KM132_RS08585 Genome accession   NZ_CP076119
Coordinates   1696633..1697412 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain NZ4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1691633..1702412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM132_RS08565 (KM132_08565) trmFO 1692320..1693627 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KM132_RS08570 (KM132_08570) xerC 1693697..1694614 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  KM132_RS08575 (KM132_08575) hslV 1694630..1695175 (+) 546 WP_110124717.1 ATP-dependent protease subunit HslV -
  KM132_RS08580 (KM132_08580) hslU 1695183..1696595 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  KM132_RS08585 (KM132_08585) codY 1696633..1697412 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KM132_RS08590 (KM132_08590) flgB 1697766..1698155 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  KM132_RS08595 (KM132_08595) flgC 1698155..1698607 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  KM132_RS08600 (KM132_08600) fliE 1698618..1698938 (+) 321 WP_121984421.1 flagellar hook-basal body complex protein FliE -
  KM132_RS08605 (KM132_08605) fliF 1698981..1700591 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  KM132_RS08610 (KM132_08610) fliG 1700604..1701620 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  KM132_RS08615 (KM132_08615) fliH 1701613..1702368 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=572104 KM132_RS08585 WP_003154263.1 1696633..1697412(+) (codY) [Bacillus velezensis strain NZ4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=572104 KM132_RS08585 WP_003154263.1 1696633..1697412(+) (codY) [Bacillus velezensis strain NZ4]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471