Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MN180_RS29080 Genome accession   NZ_CP093358
Coordinates   6187066..6187662 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain E167     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6182066..6192662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN180_RS29060 (MN180_29060) aroK 6183197..6183715 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MN180_RS29065 (MN180_29065) pilQ 6183727..6185871 (-) 2145 WP_023114914.1 type 4a pilus secretin PilQ Machinery gene
  MN180_RS29070 (MN180_29070) comL/pilP 6185925..6186449 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MN180_RS29075 (MN180_29075) pilO 6186446..6187069 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  MN180_RS29080 (MN180_29080) pilN 6187066..6187662 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  MN180_RS29085 (MN180_29085) pilM 6187662..6188726 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  MN180_RS29090 (MN180_29090) - 6188911..6191382 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=571867 MN180_RS29080 WP_003095839.1 6187066..6187662(-) (pilN) [Pseudomonas aeruginosa strain E167]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=571867 MN180_RS29080 WP_003095839.1 6187066..6187662(-) (pilN) [Pseudomonas aeruginosa strain E167]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369