Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MN180_RS26520 Genome accession   NZ_CP093358
Coordinates   5613983..5614408 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain E167     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5608983..5619408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN180_RS26505 (MN180_26505) pilX 5609547..5610134 (+) 588 WP_023114842.1 type 4a pilus minor pilin PilX -
  MN180_RS26510 (MN180_26510) pilY1 5610146..5613637 (+) 3492 WP_023114843.1 type 4a pilus biogenesis protein PilY1 -
  MN180_RS26515 (MN180_26515) pilY2 5613639..5613986 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  MN180_RS26520 (MN180_26520) comF 5613983..5614408 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  MN180_RS26525 (MN180_26525) ispH 5614455..5615399 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MN180_RS26530 (MN180_26530) fkpB 5615485..5615925 (-) 441 WP_023114844.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  MN180_RS26535 (MN180_26535) lspA 5615918..5616427 (-) 510 WP_003102615.1 signal peptidase II -
  MN180_RS26540 (MN180_26540) ileS 5616420..5619251 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=571859 MN180_RS26520 WP_003094721.1 5613983..5614408(+) (comF) [Pseudomonas aeruginosa strain E167]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=571859 MN180_RS26520 WP_003094721.1 5613983..5614408(+) (comF) [Pseudomonas aeruginosa strain E167]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCAGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383