Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   KME73_RS08340 Genome accession   NZ_CP076099
Coordinates   1601320..1601877 (-) Length   185 a.a.
NCBI ID   WP_039098349.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SPC-SNU 70-3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1596320..1606877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME73_RS08315 (KME73_08315) - 1596634..1597266 (+) 633 WP_215499408.1 CPBP family intramembrane glutamic endopeptidase -
  KME73_RS08320 (KME73_08320) - 1597320..1597967 (-) 648 WP_076786782.1 redox-sensing transcriptional repressor Rex -
  KME73_RS08325 (KME73_08325) - 1598163..1600106 (+) 1944 WP_215499409.1 ABC-F family ATP-binding cassette domain-containing protein -
  KME73_RS08330 (KME73_08330) - 1600257..1600616 (-) 360 WP_004265057.1 YccF domain-containing protein -
  KME73_RS08335 (KME73_08335) - 1600723..1601040 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  KME73_RS08340 (KME73_08340) sigH 1601320..1601877 (-) 558 WP_039098349.1 sigma-70 family RNA polymerase sigma factor Regulator
  KME73_RS08345 (KME73_08345) - 1601953..1602486 (-) 534 WP_215499410.1 NYN domain-containing protein -
  KME73_RS08350 (KME73_08350) rlmB 1602490..1603377 (-) 888 WP_080752752.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KME73_RS08355 (KME73_08355) - 1603364..1603771 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  KME73_RS08360 (KME73_08360) cysS 1603768..1605174 (-) 1407 WP_148484573.1 cysteine--tRNA ligase -
  KME73_RS08365 (KME73_08365) - 1605716..1606828 (-) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21752.94 Da        Isoelectric Point: 6.6648

>NTDB_id=571825 KME73_RS08340 WP_039098349.1 1601320..1601877(-) (sigH) [Latilactobacillus curvatus strain SPC-SNU 70-3]
MESAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=571825 KME73_RS08340 WP_039098349.1 1601320..1601877(-) (sigH) [Latilactobacillus curvatus strain SPC-SNU 70-3]
ATGGAATCAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTTGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTCGTCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719