Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LRN73_RS25620 Genome accession   NZ_CP093355
Coordinates   5461757..5462182 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain E104     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5456757..5467182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRN73_RS25605 (LRN73_25605) pilX 5457321..5457908 (+) 588 WP_023114842.1 type 4a pilus minor pilin PilX -
  LRN73_RS25610 (LRN73_25610) pilY1 5457920..5461411 (+) 3492 WP_023114843.1 type 4a pilus biogenesis protein PilY1 -
  LRN73_RS25615 (LRN73_25615) pilY2 5461413..5461760 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  LRN73_RS25620 (LRN73_25620) comF 5461757..5462182 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  LRN73_RS25625 (LRN73_25625) ispH 5462229..5463173 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LRN73_RS25630 (LRN73_25630) fkpB 5463259..5463699 (-) 441 WP_023114844.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LRN73_RS25635 (LRN73_25635) lspA 5463692..5464201 (-) 510 WP_003102615.1 signal peptidase II -
  LRN73_RS25640 (LRN73_25640) ileS 5464194..5467025 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=571537 LRN73_RS25620 WP_003094721.1 5461757..5462182(+) (comF) [Pseudomonas aeruginosa strain E104]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=571537 LRN73_RS25620 WP_003094721.1 5461757..5462182(+) (comF) [Pseudomonas aeruginosa strain E104]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCAGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383