Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KLF39_RS02395 Genome accession   NZ_CP076004
Coordinates   553881..555737 (+) Length   618 a.a.
NCBI ID   WP_011009878.1    Uniprot ID   -
Organism   Clostridium perfringens strain 1293/86     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 548881..560737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLF39_RS02380 (KLF39_02360) - 549894..550688 (+) 795 WP_115639657.1 HAD family hydrolase -
  KLF39_RS02385 (KLF39_02365) - 550823..551269 (-) 447 WP_111936449.1 MarR family winged helix-turn-helix transcriptional regulator -
  KLF39_RS02390 (KLF39_02370) - 551591..553888 (+) 2298 WP_115639656.1 ABC transporter ATP-binding protein -
  KLF39_RS02395 (KLF39_02375) rcrQ 553881..555737 (+) 1857 WP_011009878.1 ABC transporter ATP-binding protein Regulator
  KLF39_RS02400 (KLF39_02380) - 556133..557014 (+) 882 WP_115639655.1 hypothetical protein -
  KLF39_RS02405 (KLF39_02385) - 557269..558318 (+) 1050 WP_003449992.1 AEC family transporter -
  KLF39_RS02410 (KLF39_02390) - 558646..559644 (+) 999 WP_115639654.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68464.15 Da        Isoelectric Point: 5.9525

>NTDB_id=571294 KLF39_RS02395 WP_011009878.1 553881..555737(+) (rcrQ) [Clostridium perfringens strain 1293/86]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKITGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPIAQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSVDPSEIRGEVEFEDVHFGYNEDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=571294 KLF39_RS02395 WP_011009878.1 553881..555737(+) (rcrQ) [Clostridium perfringens strain 1293/86]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGTGGCCCAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCCTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATTGTAGGACCTAAGATTTTAGGTAAAGCTACTACAAAAATATTTGAAGGTTTAGTT
CAAAAGATAACAGGGGTACCAGATGCTTCTATAGATTTTGGATACATTGGAAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAACTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAATGGAGAGGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAGATAATAACTTCAGTGGTTACTTTAATTGG
TGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAATCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGATTTTGATGAATTAAATAA
TACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATTATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACAGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAACCAACCAATAGCTCAAATGGCTCAGGTTGCAAATATAATGCAATCAACAGCGGCGGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAGAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCACTTTGGATATAATGAAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGTATTAAGATTGATGGCCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAACGGAACCATAATGGAGAATTTACGTTATGGAAGACTAGATGCAACAGATGCT
GAGGTTAAAGAAGCTGCCAAGGCTGCCCATGTTGATCATTTCGTAAAAACTTTACCAGATGGATATAATATGGTTTTAAA
CGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGATCCTAAGCTAT
TAATACTTGATGAGGCTACAAGTTCAGTTGACACTCGTACAGAGCTTTTAATACAAAAAGCTATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCTCACAGACTTTCTACTATACGTGATGCAGACTTAATACTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(48-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.934

95.307

0.485