Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KLF23_RS02535 Genome accession   NZ_CP075950
Coordinates   576963..578819 (+) Length   618 a.a.
NCBI ID   WP_111936451.1    Uniprot ID   -
Organism   Clostridium perfringens strain C746     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 571963..583819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLF23_RS02520 (KLF23_02495) - 572976..573770 (+) 795 WP_011591591.1 Cof-type HAD-IIB family hydrolase -
  KLF23_RS02525 (KLF23_02500) - 573905..574351 (-) 447 WP_111936449.1 MarR family winged helix-turn-helix transcriptional regulator -
  KLF23_RS02530 (KLF23_02505) - 574673..576970 (+) 2298 WP_111936450.1 ABC transporter ATP-binding protein -
  KLF23_RS02535 (KLF23_02510) rcrQ 576963..578819 (+) 1857 WP_111936451.1 ABC transporter ATP-binding protein Regulator
  KLF23_RS02540 (KLF23_02515) - 579334..580215 (+) 882 WP_011591596.1 hypothetical protein -
  KLF23_RS02545 (KLF23_02520) - 580470..581519 (+) 1050 WP_003449992.1 AEC family transporter -
  KLF23_RS02550 (KLF23_02525) - 581848..582846 (+) 999 WP_011591598.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68477.15 Da        Isoelectric Point: 5.9515

>NTDB_id=571016 KLF23_RS02535 WP_111936451.1 576963..578819(+) (rcrQ) [Clostridium perfringens strain C746]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKITGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPIAQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSVDPSEIRGEVEFEDVHFGYNEDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEDASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQNSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=571016 KLF23_RS02535 WP_111936451.1 576963..578819(+) (rcrQ) [Clostridium perfringens strain C746]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGTGGCCCAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCCTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATTGTAGGACCTAAAATTTTAGGTAAAGCTACTACTAAAATATTTGAAGGTTTAGTT
CAAAAGATAACAGGGGTACCAGATGCTTCTATAGATTTTGGATACATTGGAAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAACTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAACGGAGAGGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAGATAATAACTTCAGTGGTTACTTTAATTGG
GGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAATCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGATTTTGATGAATTAAATAA
CACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATTATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACAGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAACCAACCAATAGCTCAAATGGCTCAGGTTGCAAATATAATGCAATCAACAGCGGCCGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAGAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCACTTTGGATATAATGAAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGTATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGATTAGATGCAACTGATGCT
GAGGTTAAAGAAGCTGCTAAGGCTGCCCATGTTGATCATTTTGTAAAAACTTTACCAGATGGATATAATATGGTCTTAAA
CGAAGACGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGATCCTAAGCTAT
TAATACTTGATGAGGCTACAAGTTCAGTTGACACTCGTACAGAGCTTTTAATACAAAAAGCTATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCTCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAATAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.104

95.307

0.487