Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   MNG38_RS06500 Genome accession   NZ_CP093289
Coordinates   1242316..1243233 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain H2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237316..1248233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS06485 (MNG38_06485) trpS 1237896..1238888 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  MNG38_RS06490 (MNG38_06490) oppA 1239632..1241269 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  MNG38_RS06495 (MNG38_06495) oppB 1241377..1242312 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  MNG38_RS06500 (MNG38_06500) amiD 1242316..1243233 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  MNG38_RS06505 (MNG38_06505) oppD 1243238..1244314 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  MNG38_RS06510 (MNG38_06510) oppF 1244316..1245233 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  MNG38_RS06515 (MNG38_06515) yjbB 1245340..1246557 (+) 1218 WP_080019554.1 MFS transporter -
  MNG38_RS06520 (MNG38_06520) yjbC 1246721..1247299 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  MNG38_RS06525 (MNG38_06525) spx 1247480..1247875 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=570883 MNG38_RS06500 WP_015252359.1 1242316..1243233(+) (amiD) [Bacillus subtilis strain H2]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=570883 MNG38_RS06500 WP_015252359.1 1242316..1243233(+) (amiD) [Bacillus subtilis strain H2]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364