Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   MMZ67_RS30190 Genome accession   NZ_CP093030
Coordinates   6340397..6340921 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain H04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6335397..6345921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ67_RS30175 (MMZ67_30180) aroB 6336513..6337619 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  MMZ67_RS30180 (MMZ67_30185) aroK 6337669..6338187 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MMZ67_RS30185 (MMZ67_30190) pilQ 6338199..6340343 (-) 2145 WP_023465329.1 type 4a pilus secretin PilQ Machinery gene
  MMZ67_RS30190 (MMZ67_30195) comL/pilP 6340397..6340921 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MMZ67_RS30195 (MMZ67_30200) pilO 6340918..6341541 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMZ67_RS30200 (MMZ67_30205) pilN 6341538..6342134 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  MMZ67_RS30205 (MMZ67_30210) pilM 6342134..6343198 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  MMZ67_RS30210 (MMZ67_30215) - 6343383..6345854 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=570125 MMZ67_RS30190 WP_003095836.1 6340397..6340921(-) (comL/pilP) [Pseudomonas aeruginosa strain H04]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=570125 MMZ67_RS30190 WP_003095836.1 6340397..6340921(-) (comL/pilP) [Pseudomonas aeruginosa strain H04]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362