Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KKI44_RS09315 Genome accession   NZ_CP075682
Coordinates   2032244..2032897 (+) Length   217 a.a.
NCBI ID   WP_214590750.1    Uniprot ID   -
Organism   Chryseobacterium sp. ZHDP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2027244..2037897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKI44_RS09300 (KKI44_09300) aceA 2027327..2028607 (-) 1281 WP_214590747.1 isocitrate lyase -
  KKI44_RS09305 (KKI44_09305) aceB 2028722..2030296 (-) 1575 WP_214590748.1 malate synthase A -
  KKI44_RS09310 (KKI44_09310) - 2030422..2031897 (+) 1476 WP_214590749.1 helix-turn-helix domain-containing protein -
  KKI44_RS09315 (KKI44_09315) comF 2032244..2032897 (+) 654 WP_214590750.1 ComF family protein Machinery gene
  KKI44_RS09320 (KKI44_09320) - 2032938..2034137 (-) 1200 WP_214590751.1 cytochrome-c peroxidase -
  KKI44_RS09325 (KKI44_09325) - 2034231..2035577 (-) 1347 WP_214590752.1 YHYH protein -
  KKI44_RS09330 (KKI44_09330) - 2035644..2036714 (-) 1071 WP_250902187.1 cytochrome-c peroxidase -
  KKI44_RS09335 (KKI44_09335) - 2036737..2037414 (-) 678 WP_214590753.1 MbnP family protein -
  KKI44_RS09340 (KKI44_09340) - 2037411..2037860 (-) 450 WP_214590754.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25374.35 Da        Isoelectric Point: 7.7487

>NTDB_id=570107 KKI44_RS09315 WP_214590750.1 2032244..2032897(+) (comF) [Chryseobacterium sp. ZHDP1]
MMFDILFPNRCIRCSRIIDADFPVCNLCFDQIHFTHNNYSEDNFVKEKCKLLFPIENAFALMQFEKENVSRKLIHELKYR
SREKIGKTLAEWTTERLDFNDQKPDLLVTVPLHPKKLRERGYNQLHLFAETLSEFYAIPFDHEVMKRNHYSKAQALKDKV
NRLKTENVFSMTKGISGKHILLIDDVFTTGNTLASIAWEILKSGDNKVSVLVMAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=570107 KKI44_RS09315 WP_214590750.1 2032244..2032897(+) (comF) [Chryseobacterium sp. ZHDP1]
ATGATGTTCGATATTTTATTTCCGAATCGCTGTATTCGGTGCAGCCGGATTATTGATGCTGATTTTCCGGTCTGTAATCT
TTGTTTTGATCAGATCCACTTTACCCACAACAATTATTCTGAAGATAATTTCGTTAAAGAAAAATGCAAACTGCTCTTTC
CCATCGAAAATGCTTTTGCATTAATGCAGTTTGAAAAAGAGAATGTGAGCCGGAAATTAATTCACGAACTGAAGTATCGG
AGTCGAGAGAAAATCGGAAAAACTTTAGCTGAATGGACGACCGAAAGACTTGATTTTAATGATCAGAAGCCTGATCTTTT
GGTGACGGTTCCGCTCCATCCGAAAAAATTAAGAGAAAGAGGGTATAACCAATTGCATTTGTTTGCAGAAACGCTTTCAG
AATTTTATGCTATTCCGTTTGATCATGAAGTGATGAAAAGAAATCATTATTCCAAAGCTCAGGCTTTAAAGGATAAAGTG
AACCGGCTGAAAACTGAAAATGTATTTTCGATGACTAAAGGTATTTCAGGCAAACATATTTTATTAATTGATGATGTTTT
TACAACGGGAAATACGCTGGCTTCGATTGCGTGGGAAATCCTGAAATCGGGAGATAACAAAGTGAGTGTTCTCGTTATGG
CGATTGATGAATAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(3-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

52.535

100

0.525