Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ATE38_RS08005 Genome accession   NZ_AP017377
Coordinates   1582431..1583204 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain OC8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577431..1588204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE38_RS07970 - 1577684..1578454 (-) 771 WP_000473705.1 isoprenyl transferase -
  ATE38_RS07975 frr 1578827..1579381 (-) 555 WP_001280006.1 ribosome recycling factor -
  ATE38_RS07980 pyrH 1579400..1580122 (-) 723 WP_000057330.1 UMP kinase -
  ATE38_RS07985 tsf 1580259..1581140 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ATE38_RS07990 - 1581175..1581288 (-) 114 WP_001789890.1 hypothetical protein -
  ATE38_RS07995 rpsB 1581322..1582089 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ATE38_RS08000 - 1582288..1582380 (-) 93 WP_001790530.1 hypothetical protein -
  ATE38_RS08005 codY 1582431..1583204 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ATE38_RS08010 hslU 1583229..1584632 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ATE38_RS08015 hslV 1584698..1585243 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ATE38_RS08020 xerC 1585240..1586136 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  ATE38_RS08025 trmFO 1586553..1587860 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=57005 ATE38_RS08005 WP_000055337.1 1582431..1583204(-) (codY) [Staphylococcus aureus strain OC8]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=57005 ATE38_RS08005 WP_000055337.1 1582431..1583204(-) (codY) [Staphylococcus aureus strain OC8]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment