Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MMZ72_RS02495 Genome accession   NZ_CP093021
Coordinates   550596..551321 (-) Length   241 a.a.
NCBI ID   WP_024915702.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 545596..556321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS02470 (MMZ72_02470) - 546065..546580 (+) 516 WP_024915697.1 glycine cleavage system protein R -
  MMZ72_RS02475 (MMZ72_02475) rarD 547269..548165 (-) 897 WP_241469361.1 EamA family transporter RarD -
  MMZ72_RS02480 (MMZ72_02480) - 548372..549346 (-) 975 WP_024915699.1 serine/threonine protein kinase -
  MMZ72_RS02485 (MMZ72_02485) - 549408..550166 (-) 759 WP_024915700.1 TOBE domain-containing protein -
  MMZ72_RS02490 (MMZ72_02490) - 550234..550554 (-) 321 WP_024915701.1 YfiM family lipoprotein -
  MMZ72_RS02495 (MMZ72_02495) comF 550596..551321 (-) 726 WP_024915702.1 ComF family protein Machinery gene
  MMZ72_RS02500 (MMZ72_02500) - 551460..551753 (-) 294 WP_024915703.1 hypothetical protein -
  MMZ72_RS02505 (MMZ72_02505) - 551807..552724 (-) 918 WP_124181601.1 LysR family transcriptional regulator -
  MMZ72_RS02510 (MMZ72_02510) - 552850..553608 (+) 759 WP_024915705.1 5-oxoprolinase subunit PxpA -
  MMZ72_RS02515 (MMZ72_02515) - 553685..553933 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  MMZ72_RS02520 (MMZ72_02520) - 553944..555320 (+) 1377 WP_058141002.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  MMZ72_RS02525 (MMZ72_02525) - 555322..556200 (+) 879 WP_241469362.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27087.57 Da        Isoelectric Point: 11.0325

>NTDB_id=569641 MMZ72_RS02495 WP_024915702.1 550596..551321(-) (comF) [Pseudomonas aeruginosa strain H09]
MSFPLLHLSRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLAVVDDVLTTGATAERLSRLLRRAGATRVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=569641 MMZ72_RS02495 WP_024915702.1 550596..551321(-) (comF) [Pseudomonas aeruginosa strain H09]
ATGTCGTTCCCGCTTCTGCATCTCTCACGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGCGCCGCCGACCTGCCATGGTCGCGCCAGCAGTGCCGACGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAATGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCCGCCCAGCAGGGCCTGGACGCGACGGTACGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCAGTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCACGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(10-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.705

100

0.382