Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   KIW23_RS01510 Genome accession   NZ_CP075561
Coordinates   334791..335726 (+) Length   311 a.a.
NCBI ID   WP_070787692.1    Uniprot ID   A0A9Q5JGT0
Organism   Floricoccus penangensis strain ML061-4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329791..340726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIW23_RS01490 (KIW23_01500) tyrS 331663..332916 (+) 1254 WP_070787690.1 tyrosine--tRNA ligase -
  KIW23_RS01495 (KIW23_01505) def 333026..333619 (-) 594 WP_251315645.1 peptide deformylase -
  KIW23_RS01500 (KIW23_01510) rpsO 333884..334153 (+) 270 WP_070787691.1 30S ribosomal protein S15 -
  KIW23_RS01505 (KIW23_01515) - 334302..334790 (+) 489 WP_251315646.1 GNAT family N-acetyltransferase -
  KIW23_RS01510 (KIW23_01520) comYH 334791..335726 (+) 936 WP_070787692.1 class I SAM-dependent methyltransferase Machinery gene
  KIW23_RS01515 (KIW23_01525) - 335789..336979 (+) 1191 WP_070787693.1 acetate kinase -
  KIW23_RS01520 (KIW23_01530) - 337077..338861 (+) 1785 WP_251315129.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  KIW23_RS01525 (KIW23_01535) - 339198..339770 (+) 573 WP_070787695.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35006.78 Da        Isoelectric Point: 4.3238

>NTDB_id=569553 KIW23_RS01510 WP_070787692.1 334791..335726(+) (comYH) [Floricoccus penangensis strain ML061-4]
MDIQKVEEAFNLIIENTQTLEQELHTHFYDALIEQNVAYVEGKSSNETVEKNNEKLHSLNLSQQEWQKAFQFVLIKGGQF
AKLQANHQFTPDSIAYIINFIIDTLKPQKDISIVELGSGTGNMASTLLSNSDKNIFYIGIEVDDLLIDLAASIADVMKLK
VEFMQQDAVKPLLIEPSDVVISDLPIGFYPDDEEASNFQVATDKDEHTYAHHLLMEQALNYLKDDGIAIFLAPVDLLTSG
QADELKGWMKDSAHLSALIALPQNLFKNSPKAIFVFDKKITNKPTFVYNLSSLTETEIVQQFMAEFTKNVL

Nucleotide


Download         Length: 936 bp        

>NTDB_id=569553 KIW23_RS01510 WP_070787692.1 334791..335726(+) (comYH) [Floricoccus penangensis strain ML061-4]
ATGGATATTCAAAAAGTAGAAGAAGCTTTTAATTTAATTATTGAAAATACACAAACTCTTGAGCAAGAATTACATACGCA
TTTCTACGATGCTTTGATTGAGCAAAATGTTGCTTATGTGGAAGGTAAATCTTCAAACGAGACGGTTGAAAAAAATAATG
AGAAACTTCATTCTTTAAATCTTAGTCAGCAAGAGTGGCAGAAAGCATTCCAATTTGTTCTAATAAAAGGAGGCCAATTT
GCAAAATTACAGGCAAATCATCAATTTACTCCTGATAGTATTGCTTATATTATCAATTTTATAATTGATACATTAAAACC
ACAAAAAGACATATCGATAGTCGAACTTGGGTCGGGTACGGGTAACATGGCATCAACACTTTTATCAAACTCTGATAAGA
ATATATTTTATATAGGTATAGAAGTCGATGATCTTTTGATTGATTTAGCAGCAAGTATTGCTGATGTTATGAAACTTAAG
GTTGAATTTATGCAACAGGATGCTGTTAAGCCGCTTCTAATTGAACCTAGTGATGTAGTTATAAGTGACTTACCAATTGG
TTTTTATCCCGATGATGAAGAAGCGTCAAATTTTCAAGTTGCAACGGATAAAGATGAACATACCTACGCTCACCATTTAT
TGATGGAACAGGCACTTAATTATCTAAAAGATGATGGTATTGCTATTTTCCTTGCTCCTGTAGATTTATTGACTAGTGGA
CAGGCAGATGAATTAAAGGGATGGATGAAAGATTCAGCACACTTATCAGCATTGATTGCCTTACCACAAAATCTATTTAA
AAATTCTCCTAAGGCAATTTTTGTATTCGATAAAAAAATCACAAATAAACCTACTTTTGTATATAACTTATCAAGCCTAA
CTGAGACAGAAATAGTACAGCAATTTATGGCTGAATTCACAAAGAATGTGTTATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(80-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

53.055

100

0.531
  comYH Streptococcus mutans UA159

52.412

100

0.524