Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KHS93_RS08085 Genome accession   NZ_CP075547
Coordinates   1610617..1611396 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605617..1616396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS08065 (KHS93_08065) trmFO 1606304..1607611 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KHS93_RS08070 (KHS93_08070) xerC 1607681..1608598 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  KHS93_RS08075 (KHS93_08075) hslV 1608614..1609159 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  KHS93_RS08080 (KHS93_08080) hslU 1609167..1610579 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  KHS93_RS08085 (KHS93_08085) codY 1610617..1611396 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KHS93_RS08090 (KHS93_08090) flgB 1611750..1612139 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  KHS93_RS08095 (KHS93_08095) flgC 1612139..1612591 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  KHS93_RS08100 (KHS93_08100) fliE 1612602..1612922 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  KHS93_RS08105 (KHS93_08105) fliF 1612965..1614575 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  KHS93_RS08110 (KHS93_08110) fliG 1614588..1615604 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  KHS93_RS08115 (KHS93_08115) fliH 1615597..1616352 (+) 756 WP_060386938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=569452 KHS93_RS08085 WP_003154263.1 1610617..1611396(+) (codY) [Bacillus amyloliquefaciens strain SN16-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=569452 KHS93_RS08085 WP_003154263.1 1610617..1611396(+) (codY) [Bacillus amyloliquefaciens strain SN16-1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471