Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KI430_RS17295 Genome accession   NZ_CP075338
Coordinates   3770972..3771493 (-) Length   173 a.a.
NCBI ID   WP_248876129.1    Uniprot ID   -
Organism   Epilithonimonas zeae strain ZM18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3765972..3776493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI430_RS17270 (KI430_17265) - 3766812..3767483 (-) 672 WP_248876125.1 DUF4290 domain-containing protein -
  KI430_RS17275 (KI430_17270) - 3767603..3768028 (-) 426 WP_248876126.1 thiol-disulfide oxidoreductase DCC family protein -
  KI430_RS17280 (KI430_17275) - 3768025..3768483 (-) 459 WP_248876127.1 heme-binding domain-containing protein -
  KI430_RS17285 (KI430_17280) der 3768868..3770175 (+) 1308 WP_248876128.1 ribosome biogenesis GTPase Der -
  KI430_RS17290 (KI430_17285) upp 3770256..3770906 (+) 651 WP_074236535.1 uracil phosphoribosyltransferase -
  KI430_RS17295 (KI430_17290) comF 3770972..3771493 (-) 522 WP_248876129.1 ComF family protein Machinery gene
  KI430_RS17300 (KI430_17295) glgP 3771758..3773410 (-) 1653 WP_248876130.1 alpha-glucan family phosphorylase -
  KI430_RS17305 (KI430_17300) - 3773697..3774476 (+) 780 WP_248876131.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20277.55 Da        Isoelectric Point: 10.3467

>NTDB_id=568853 KI430_RS17295 WP_248876129.1 3770972..3771493(-) (comF) [Epilithonimonas zeae strain ZM18]
MDKVALQIPVENAYSLLYYEKESLAQRIIHQLKYNHREKIGKVLAKWITERIDFSNSKPDLLVTVPLHYKKLKQRGYNQL
HLFGNELSKHYNIPVNHTLLKRIKHSRAQAKKNQNERLKTKNAYQLTQNINDKHILLIDDVYTTGNTMSNIAWEILNNSK
NVKISILVMAMDV

Nucleotide


Download         Length: 522 bp        

>NTDB_id=568853 KI430_RS17295 WP_248876129.1 3770972..3771493(-) (comF) [Epilithonimonas zeae strain ZM18]
ATGGATAAAGTAGCATTACAGATTCCTGTTGAAAATGCCTACTCGCTTTTGTATTATGAAAAAGAAAGTCTGGCTCAAAG
AATCATTCATCAACTCAAATATAATCACAGAGAAAAAATCGGAAAAGTCTTAGCCAAATGGATTACTGAGAGAATTGATT
TCAGCAATAGCAAACCTGATTTGCTCGTAACAGTTCCACTCCATTATAAGAAATTAAAACAACGCGGTTATAATCAGCTT
CATCTTTTCGGGAATGAGTTATCAAAGCATTACAACATCCCAGTTAATCATACTTTATTAAAAAGAATCAAACACTCCCG
AGCTCAGGCAAAGAAAAATCAAAACGAAAGACTGAAAACAAAAAATGCTTATCAATTGACACAAAATATCAATGATAAGC
ATATTCTTTTGATTGATGACGTTTACACAACCGGAAACACAATGTCGAATATCGCGTGGGAAATTCTCAATAATTCCAAG
AATGTAAAAATCAGTATTTTGGTAATGGCGATGGACGTTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(101-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.765

98.266

0.509