Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MMB16_RS29450 Genome accession   NZ_CP092846
Coordinates   6246122..6246718 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain ISS SRV-K     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6241122..6251718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMB16_RS29430 (MMB16_29430) aroK 6242253..6242771 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MMB16_RS29435 (MMB16_29435) pilQ 6242783..6244927 (-) 2145 WP_003121202.1 type 4a pilus secretin PilQ Machinery gene
  MMB16_RS29440 (MMB16_29440) comL/pilP 6244981..6245505 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MMB16_RS29445 (MMB16_29445) pilO 6245502..6246125 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMB16_RS29450 (MMB16_29450) pilN 6246122..6246718 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  MMB16_RS29455 (MMB16_29455) pilM 6246718..6247782 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  MMB16_RS29460 (MMB16_29460) - 6247967..6250438 (+) 2472 WP_023093348.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=568643 MMB16_RS29450 WP_003095839.1 6246122..6246718(-) (pilN) [Pseudomonas aeruginosa strain ISS SRV-K]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=568643 MMB16_RS29450 WP_003095839.1 6246122..6246718(-) (pilN) [Pseudomonas aeruginosa strain ISS SRV-K]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369