Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MMB16_RS26875 Genome accession   NZ_CP092846
Coordinates   5668237..5668662 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain ISS SRV-K     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5663237..5673662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMB16_RS26860 (MMB16_26860) pilX 5663801..5664388 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  MMB16_RS26865 (MMB16_26865) pilY1 5664400..5667891 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  MMB16_RS26870 (MMB16_26870) pilY2 5667893..5668240 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  MMB16_RS26875 (MMB16_26875) comF 5668237..5668662 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  MMB16_RS26880 (MMB16_26880) ispH 5668709..5669653 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MMB16_RS26885 (MMB16_26885) fkpB 5669739..5670179 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  MMB16_RS26890 (MMB16_26890) lspA 5670172..5670681 (-) 510 WP_003102615.1 signal peptidase II -
  MMB16_RS26895 (MMB16_26895) ileS 5670674..5673505 (-) 2832 WP_003119417.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=568635 MMB16_RS26875 WP_003094721.1 5668237..5668662(+) (comF) [Pseudomonas aeruginosa strain ISS SRV-K]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=568635 MMB16_RS26875 WP_003094721.1 5668237..5668662(+) (comF) [Pseudomonas aeruginosa strain ISS SRV-K]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383