Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IOMTU133_RS28530 Genome accession   NZ_AP017302
Coordinates   6232162..6232686 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain IOMTU 133     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6227162..6237686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOMTU133_RS28515 (IOMTU133_5879) aroB 6228278..6229384 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  IOMTU133_RS28520 (IOMTU133_5880) aroK 6229434..6229952 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IOMTU133_RS28525 (IOMTU133_5881) pilQ 6229964..6232108 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  IOMTU133_RS28530 (IOMTU133_5882) comL/pilP 6232162..6232686 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IOMTU133_RS28535 (IOMTU133_5883) pilO 6232683..6233306 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  IOMTU133_RS28540 (IOMTU133_5884) pilN 6233303..6233899 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IOMTU133_RS28545 (IOMTU133_5885) pilM 6233899..6234963 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IOMTU133_RS28550 (IOMTU133_5886) - 6235148..6237619 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=56843 IOMTU133_RS28530 WP_003095836.1 6232162..6232686(-) (comL/pilP) [Pseudomonas aeruginosa strain IOMTU 133]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=56843 IOMTU133_RS28530 WP_003095836.1 6232162..6232686(-) (comL/pilP) [Pseudomonas aeruginosa strain IOMTU 133]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment