Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   KIP81_RS03685 Genome accession   NZ_CP075172
Coordinates   712714..713577 (+) Length   287 a.a.
NCBI ID   WP_243603213.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 707714..718577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS03655 (KIP81_03660) - 707932..708807 (+) 876 WP_004231084.1 F0F1 ATP synthase subunit gamma -
  KIP81_RS03660 (KIP81_03665) atpD 708873..710279 (+) 1407 WP_024344335.1 F0F1 ATP synthase subunit beta -
  KIP81_RS03665 (KIP81_03670) - 710292..710708 (+) 417 WP_074629684.1 F0F1 ATP synthase subunit epsilon -
  KIP81_RS03670 (KIP81_03675) - 710850..711086 (+) 237 WP_021142001.1 DUF1146 family protein -
  KIP81_RS03675 (KIP81_03680) murA 711149..712423 (+) 1275 WP_243603212.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KIP81_RS03680 (KIP81_03685) - 712426..712614 (+) 189 WP_024344337.1 DNA-directed RNA polymerase subunit beta -
  KIP81_RS03685 (KIP81_03690) endA 712714..713577 (+) 864 WP_243603213.1 DNA/RNA non-specific endonuclease Machinery gene
  KIP81_RS03690 (KIP81_03695) pheS 713865..714908 (+) 1044 WP_027967999.1 phenylalanine--tRNA ligase subunit alpha -
  KIP81_RS03695 (KIP81_03700) - 714940..715464 (+) 525 WP_021142007.1 N-acetyltransferase -
  KIP81_RS03700 (KIP81_03705) pheT 715534..717939 (+) 2406 WP_024344340.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 30637.79 Da        Isoelectric Point: 7.4566

>NTDB_id=568246 KIP81_RS03685 WP_243603213.1 712714..713577(+) (endA) [Streptococcus equinus strain SheepZ001]
MAKKSNLSKKTKSIISLLVLLVGIGTGWVTTSDSSDPVSQVLSLVTGESSSVASNHSSANESAPSQELAESVLTDNVKAQ
LGSTIEWNGAGAYLVNENKTSLNAKVASKPYANNKTKVVQGQSVPIVANSLLSKSTRQYRSREETGNGSTSWTPAGWHQV
QNLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEARSEDSTGQNYYEGLVRRALDQNKRVRYRVTLI
YDGDNILASGTHLEAKSSDGSLEFNVFVPNVQSGLTIDYYSGQVSVN

Nucleotide


Download         Length: 864 bp        

>NTDB_id=568246 KIP81_RS03685 WP_243603213.1 712714..713577(+) (endA) [Streptococcus equinus strain SheepZ001]
ATGGCAAAAAAATCAAATCTGTCTAAAAAGACAAAATCAATTATCTCTTTACTGGTTTTATTAGTTGGTATCGGTACAGG
GTGGGTAACGACATCTGATTCTAGTGATCCAGTCAGTCAAGTTTTATCCCTTGTTACGGGAGAATCATCATCGGTTGCTT
CAAATCATTCAAGTGCTAATGAATCAGCACCAAGTCAGGAATTGGCTGAGTCAGTTTTAACTGATAATGTTAAAGCACAG
TTAGGTTCAACTATTGAATGGAATGGAGCAGGGGCTTATCTTGTAAATGAAAATAAAACCTCTTTGAATGCAAAGGTTGC
AAGCAAACCTTATGCCAATAATAAGACGAAAGTTGTACAAGGACAGTCAGTTCCGATAGTTGCTAACTCACTTTTGAGTA
AGTCAACCCGTCAATACCGAAGCCGTGAGGAAACAGGTAATGGCTCAACCTCTTGGACGCCAGCTGGTTGGCATCAAGTA
CAAAATCTATCTGGAACTTATAGCCATGCGGTTGATCGTGGGCATTTGCTTGGATACGCCTTAGTCGGTGGGCTAAAAGG
TTTTGATGCCTCAACAAGTAACCCTGAAAATGTTGCTACTCAGACAGCTTGGGCAAATGAGGCTAGATCAGAAGATTCAA
CAGGACAGAATTACTATGAAGGGCTTGTCCGTAGAGCACTTGATCAGAATAAACGCGTTCGTTATCGTGTGACTTTGATT
TATGATGGGGACAATATTTTAGCTAGTGGAACACATTTAGAAGCAAAATCATCTGACGGTAGCTTAGAGTTTAATGTCTT
TGTTCCAAACGTTCAAAGTGGACTTACGATTGACTATTATTCTGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.667

78.397

0.554
  endA Streptococcus pneumoniae D39

70.667

78.397

0.554
  endA Streptococcus pneumoniae R6

70.667

78.397

0.554
  endA Streptococcus pneumoniae TIGR4

70.667

78.397

0.554