Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KIK00_RS11075 Genome accession   NZ_CP075170
Coordinates   2437184..2437837 (+) Length   217 a.a.
NCBI ID   WP_255816598.1    Uniprot ID   -
Organism   Chryseobacterium sp. MA9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2432184..2442837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK00_RS11060 (KIK00_11055) aceA 2432442..2433722 (-) 1281 WP_255816595.1 isocitrate lyase -
  KIK00_RS11065 (KIK00_11060) aceB 2433850..2435424 (-) 1575 WP_255816596.1 malate synthase A -
  KIK00_RS11070 (KIK00_11065) - 2435551..2437029 (+) 1479 WP_255816597.1 helix-turn-helix domain-containing protein -
  KIK00_RS11075 (KIK00_11070) comF 2437184..2437837 (+) 654 WP_255816598.1 ComF family protein Machinery gene
  KIK00_RS11080 (KIK00_11075) - 2438021..2438707 (+) 687 WP_255816599.1 alpha/beta fold hydrolase -
  KIK00_RS11085 (KIK00_11080) upp 2438709..2439359 (-) 651 WP_255816600.1 uracil phosphoribosyltransferase -
  KIK00_RS11090 (KIK00_11085) der 2439604..2440914 (-) 1311 WP_047378925.1 ribosome biogenesis GTPase Der -
  KIK00_RS11100 (KIK00_11095) - 2441511..2442035 (-) 525 WP_255816601.1 antirestriction protein ArdA -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25345.23 Da        Isoelectric Point: 7.1820

>NTDB_id=568189 KIK00_RS11075 WP_255816598.1 2437184..2437837(+) (comF) [Chryseobacterium sp. MA9]
MILDLLFPNRCIHCNRIIDPELLVCDLCFSQIYFTHYSYFENNPIKEKCSLFFPVENTFALLQFEEESLSRKIIHELKYK
GREKTGKIIADWTTERLDFDHEKPDLLVSIPLHPKKFKERGYNQLHLFTETLSSFYNIPFDHQLIKRNYYSKAQALKDKK
HRLESINTFSVTQPVTGKHILLIDDVFTTGNTVSSVAWEILNAGNNKVSVLVMAVDI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=568189 KIK00_RS11075 WP_255816598.1 2437184..2437837(+) (comF) [Chryseobacterium sp. MA9]
ATGATATTAGATTTATTATTTCCCAACCGTTGCATCCACTGCAACAGAATCATTGATCCTGAACTTTTGGTGTGTGATCT
TTGTTTTAGCCAGATTTATTTTACCCACTATTCCTACTTTGAAAATAATCCGATTAAGGAAAAATGCAGTTTGTTTTTCC
CTGTTGAAAACACCTTTGCCTTACTGCAATTTGAAGAGGAGAGCTTAAGCCGAAAGATTATCCATGAACTGAAATACAAA
GGCCGGGAAAAAACAGGAAAGATCATTGCAGACTGGACAACAGAACGTCTGGATTTCGATCACGAAAAACCTGATTTACT
GGTAAGCATACCTCTTCATCCAAAGAAATTTAAGGAACGCGGATATAATCAACTCCATTTATTCACTGAAACTTTATCTT
CATTTTACAATATCCCTTTCGATCATCAATTAATTAAACGAAATTACTATTCAAAAGCTCAGGCTTTAAAAGATAAGAAA
CATAGGTTGGAATCTATTAATACATTTTCCGTCACCCAACCTGTAACAGGAAAGCATATTCTTCTGATTGACGATGTTTT
CACCACAGGAAATACAGTTTCATCAGTTGCCTGGGAGATTTTAAATGCAGGAAATAATAAAGTGAGCGTTTTGGTGATGG
CAGTGGATATCTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.852

99.539

0.516