Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   AVFI_RS11225 Genome accession   NZ_CP092712
Coordinates   2445075..2446058 (+) Length   327 a.a.
NCBI ID   WP_005420813.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2440075..2451058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS11210 (AVFI_11210) - 2441237..2442910 (+) 1674 WP_017019173.1 ABC transporter substrate-binding protein -
  AVFI_RS11215 (AVFI_11215) - 2443059..2444045 (+) 987 WP_012534180.1 ABC transporter permease -
  AVFI_RS11220 (AVFI_11220) - 2444048..2445073 (+) 1026 WP_065595746.1 ABC transporter permease -
  AVFI_RS11225 (AVFI_11225) amiE 2445075..2446058 (+) 984 WP_005420813.1 ABC transporter ATP-binding protein Regulator
  AVFI_RS11230 (AVFI_11230) - 2446081..2447076 (+) 996 WP_005420816.1 ABC transporter ATP-binding protein -
  AVFI_RS11235 (AVFI_11235) - 2447125..2448843 (+) 1719 WP_054775904.1 glycoside hydrolase family 9 protein -
  AVFI_RS11240 (AVFI_11240) - 2448846..2449721 (+) 876 WP_188863741.1 N-acetylglucosamine kinase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36332.98 Da        Isoelectric Point: 6.2281

>NTDB_id=567969 AVFI_RS11225 WP_005420813.1 2445075..2446058(+) (amiE) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MTDPQISIRNLCVDYITDAGDVRAVNNVSFDIGKGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVFFDGKDILKY
SDAQMQAFRWSEMSMVFQSAMNALNPVLTMEEQFCDVIMRHTTMTREQAISRAQGLLEIVDIHPSRLTDYPHQFSGGMRQ
RLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVASSKE
ILTSPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLEVPQGCRFQARCDRVHEACRSIPTQLRQIEPGHLSNCHLYGE
TIAQVKA

Nucleotide


Download         Length: 984 bp        

>NTDB_id=567969 AVFI_RS11225 WP_005420813.1 2445075..2446058(+) (amiE) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGACTGACCCACAAATTTCTATCCGCAATCTGTGTGTGGATTACATTACTGACGCAGGTGATGTACGTGCTGTAAACAA
TGTGAGTTTTGACATTGGTAAAGGTGAAGTCTTTGGTCTAGCAGGCGAATCTGGTTGTGGTAAATCAACCGTAGCATTCT
CTTTAATGCGTCTGCATAAGCCGCCAGCATTCATTACCGGTGGTGAAGTGTTCTTCGATGGTAAAGATATTTTAAAGTAC
AGCGATGCTCAAATGCAGGCATTCCGTTGGAGTGAAATGTCAATGGTATTCCAAAGCGCCATGAACGCATTGAACCCAGT
ACTCACGATGGAAGAACAATTTTGTGACGTGATTATGCGCCACACAACCATGACTCGTGAACAAGCCATTTCTCGTGCAC
AAGGTTTACTTGAAATTGTTGATATTCACCCTAGTCGTTTGACTGATTACCCACACCAGTTCTCTGGTGGTATGCGTCAA
CGTTTAGTTATTGCAATTGCGTTAGCGTTAAACCCGAAAATGATCATTATGGATGAACCAACTACTGCTCTTGATGTGGT
TGTTCAACGTGAGATCTTACAAAAAATCTATGCGCTTAAAGAAGAGTTTGGTTTCTCTATTCTGTTCATTACGCACGATT
TATCGTTAATGGTTGAGTTCTCTGATCGTATTGGGATCATGTATTCAGGTGAATTAATCGAAGTTGCTTCTTCTAAAGAA
ATCTTAACTTCACCTTATCACCCATATACAAAAGGCCTTGGTAGCTCATTCCCACCGTTAACGGGACCAAAAACGAAATT
AACAGGGATCCCAGGAAACCCTCTTAACTTACTAGAGGTTCCACAAGGCTGTCGCTTCCAAGCTCGCTGTGATCGTGTAC
ATGAAGCATGTCGTTCGATTCCAACACAGCTTCGTCAGATCGAGCCTGGACACTTGTCAAACTGTCACCTTTACGGTGAA
ACCATTGCACAAGTAAAAGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(25-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

36.728

99.083

0.364