Detailed information NTG0567800

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: MKR81_RS10475
• Genome accession: NZ_CP092682
• Coordinates: 2264559..2265914 (-)
• Length: 451 a.a.
• NCBI ID: WP_275892608.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain IFL1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2259559..2270914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKR81_RS10455 (MKR81_10455)	-	2260966..2261232 (-)	267	WP_012127608.1	DksA/TraR family C4-type zinc finger protein	-
MKR81_RS10460 (MKR81_10460)	-	2261373..2262086 (-)	714	WP_240304513.1	hypothetical protein	-
MKR81_RS10465 (MKR81_10465)	-	2262086..2262955 (-)	870	WP_240304514.1	hypothetical protein	-
MKR81_RS10470 (MKR81_10470)	serS	2263159..2264466 (-)	1308	WP_045378081.1	serine--tRNA ligase	-
MKR81_RS10475 (MKR81_10475)	rarA	2264559..2265914 (-)	1356	WP_275892608.1	replication-associated recombination protein A	Machinery gene
MKR81_RS10480 (MKR81_10480)	lolA	2265915..2266541 (-)	627	WP_005431005.1	outer membrane lipoprotein chaperone LolA	-
MKR81_RS10485 (MKR81_10485)	-	2266603..2269899 (-)	3297	WP_240304516.1	DNA translocase FtsK 4TM domain-containing protein	-
MKR81_RS10490 (MKR81_10490)	lrp	2270052..2270546 (-)	495	WP_005528862.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 50032.45 Da
• Isoelectric Point: 5.5038

>NTDB_id=567800 MKR81_RS10475 WP_275892608.1 2264559..2265914(-) (rarA) [Vibrio campbellii strain IFL1]
MVVSNYTLDFSGDEDFRPLAARMRPETIEQYIGQQHILGPSKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAE
VERVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRA
RVYKLTSLDKDEISLALNQAISDKERGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLL
AEVAGEKVSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSA
WDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPG
AYAAGEQYLPPEMGDRRYYQPTNRGLETKIGEKLDYLATLDANSPQKRYEK

Nucleotide

• Length: 1356 bp

>NTDB_id=567800 MKR81_RS10475 WP_275892608.1 2264559..2265914(-) (rarA) [Vibrio campbellii strain IFL1]
TTGGTAGTGAGCAATTACACATTAGATTTCTCGGGGGACGAAGATTTTCGTCCCCTTGCTGCTCGTATGAGACCGGAAAC
GATTGAACAGTACATCGGTCAGCAGCATATTTTAGGTCCTAGTAAGCCACTACGCCGTGCGTTAGAGGCTGGTCATATTC
ACTCTATGATCCTTTGGGGACCGCCAGGCACAGGTAAGACGACGTTGGCAGAAGTGGCGGCAAACTATGCCAATGCAGAA
GTTGAGCGTGTGTCTGCGGTGACGTCTGGCGTGAAAGAAATTCGTGCTGCAATCGAGAAAGCGCGTGAGAACAAAATGGC
GGGTCGCCGCACCATCTTATTTGTGGATGAGGTACATCGCTTCAACAAATCTCAACAAGACGCGTTTTTACCGCATATCG
AAGATGGCACCGTTACCTTTATTGGTGCGACGACAGAAAACCCATCGTTTGAGTTAAACAACGCACTGCTGTCACGTGCG
CGTGTGTACAAGTTAACGTCTCTCGATAAAGATGAAATCTCACTGGCGCTGAATCAAGCGATCAGTGACAAAGAGCGTGG
GTTGGGAAATACGCCTGCACACTTCGCTGATAACGTATTAGATCGCTTAGCAGAACTGGTAAACGGTGATGCACGCATGT
CTCTCAACTACCTTGAGCTGCTCTACGACATGGCAGAGGATAATGCGCAGGGCGAAAAAGAAATCACGCTTAAGTTGCTT
GCGGAAGTAGCAGGGGAGAAAGTCTCTCGCTTCGATAACAAAGGCGACATTTGGTACGACTTAATCTCTGCTGTACACAA
GTCGATTCGTGGCTCTAACCCTGATGCTGCGCTTTACTGGGCTGCACGTATGATCGCAGCAGGTTGCGACCCTTTGTACA
TTGCTCGCCGCCTACTGGCGATCGCTTCTGAAGATGTAGGTAATGCTGACCCTCGCGCAATGCAAGTGGCACTTTCCGCA
TGGGATTGCTTTACTCGTGTTGGTCCGGCAGAAGGTGAGCGCGCTATTGCACAGGCGATCGTGTACTTAGCATGTGCGCC
AAAAAGTAATGCGGTATACGTGGCGTGGAAACAAGCGCTCACAGATGCTCATAACTTGCCTGAATATGAAGTGCCGCATC
ACCTTAGAAATGCACCAACCAGTTTGATGAAAGACATGGGTTATGGGGCAGAGTATCGTTATGCTCACGATGAGCCTGGC
GCTTACGCTGCTGGTGAGCAATATTTGCCGCCTGAAATGGGCGATCGTAGGTACTATCAGCCGACAAATCGTGGTCTAGA
GACCAAAATCGGCGAAAAGTTAGATTACTTGGCTACTTTAGACGCAAATAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (191-270)

• ATPase family associated with various cellular activities (AAA) (AAA) (56-161)

• MgsA AAA+ ATPase C terminal (MgsA_C) (271-437)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.48	93.792	0.37