Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MID12_RS32265 Genome accession   NZ_CP092644
Coordinates   2867116..2867394 (-) Length   92 a.a.
NCBI ID   WP_317633371.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO ZS0520     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2862116..2872394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID12_RS10735 - 2863075..2863662 (+) 588 WP_040249341.1 GNAT family N-acetyltransferase -
  MID12_RS10740 - 2863745..2864980 (+) 1236 WP_263166471.1 winged helix-turn-helix domain-containing protein -
  MID12_RS10745 - 2865057..2865803 (-) 747 WP_040249345.1 response regulator -
  MID12_RS10750 hpf 2866021..2866737 (-) 717 WP_040249347.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  MID12_RS32265 comF 2867116..2867394 (-) 279 WP_317633371.1 ComF family protein Machinery gene
  MID12_RS10760 thrS 2868005..2869231 (-) 1227 WP_263173051.1 threonine--tRNA ligase -
  MID12_RS10765 - 2869506..2871362 (-) 1857 WP_411576938.1 LpqB family beta-propeller domain-containing protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 9667.08 Da        Isoelectric Point: 12.0434

>NTDB_id=567665 MID12_RS32265 WP_317633371.1 2867116..2867394(-) (comF) [Streptomyces sp. SCSIO ZS0520]
MVPVLRQRRAVADQSGLNSRQRKANLKGALEVNARAVRLFGSGARVIIVDDLLTTGSSLAEAARALSADAGVRRISAAVI
AAPAEAFEVNRN

Nucleotide


Download         Length: 279 bp        

>NTDB_id=567665 MID12_RS32265 WP_317633371.1 2867116..2867394(-) (comF) [Streptomyces sp. SCSIO ZS0520]
GTGGTGCCCGTACTGCGGCAGCGGCGGGCGGTCGCCGATCAGTCGGGGCTCAACTCCCGGCAGCGGAAGGCGAATCTGAA
AGGGGCGCTGGAAGTGAATGCGAGAGCGGTCCGGCTGTTCGGCTCGGGGGCTCGCGTGATCATTGTGGACGATCTTCTGA
CCACGGGTTCTTCGTTGGCCGAAGCCGCACGCGCATTGTCCGCGGATGCCGGGGTAAGGAGGATCTCAGCGGCGGTGATC
GCCGCTCCTGCCGAGGCTTTCGAAGTAAACAGGAACTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(42-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

36.957

100

0.37