Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   MID12_RS22105 Genome accession   NZ_CP092644
Coordinates   5540071..5542293 (+) Length   740 a.a.
NCBI ID   WP_263170193.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO ZS0520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5535071..5547293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID12_RS22090 - 5536493..5537278 (-) 786 WP_263173361.1 sugar phosphate isomerase/epimerase family protein -
  MID12_RS22095 - 5537408..5538469 (-) 1062 WP_040258072.1 LacI family DNA-binding transcriptional regulator -
  MID12_RS22100 - 5538751..5540001 (+) 1251 WP_263170190.1 PQQ-binding-like beta-propeller repeat protein -
  MID12_RS22105 recD/recD2/recDB 5540071..5542293 (+) 2223 WP_263170193.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MID12_RS22110 - 5542626..5543942 (+) 1317 WP_186095463.1 citrate synthase -
  MID12_RS22115 - 5544691..5547000 (-) 2310 WP_411576991.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80189.58 Da        Isoelectric Point: 6.7860

>NTDB_id=567648 MID12_RS22105 WP_263170193.1 5540071..5542293(+) (recD/recD2/recDB) [Streptomyces sp. SCSIO ZS0520]
MSGLSVVEGVLERITYANEDNGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPRIADRITEHFGLKTLDIIEEEPGRLVEVPGLGPKRTRLIGAAWEEQKAIKEVMIFLQGVGV
STSIAVRIYKKYGDSSIDVVRHQPYRLAADVWGIGFLTADRIAQSVGIPHDSPERVMAGIQYALSQSTDQGHCFLPEEQL
LSDAVKLLQVDSQLVIECLDRLAAQDEGVVRERVPGPEGGEEVTAVYLVPFHRAELSLSAQVLRLLRTEQERLPAFAEVD
WDKALGWLAARTGTELAPEQREAVRLALTRRVAVLTGGPGCGKSFTVRSVVELARAKQAKVVLAAPTGRAAKRLAELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDLLAP
GSPVPAVRLTRIFRQAQQSGVVTNAHRINSGTPPLTSGLDDFFLFVEDDTEEAGRLTVDVAARRVPARFGLDPRRDIQVL
APMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTSLSTEDQRLTVRT
DEDEEVPYDFDELDELSHAYAVTIHRSQGSEYPAVVIPVTMSAWMMLQRNLLYTAVTRAKKLVVLVGSRRALGQAVRTLS
AGRRCTALDFRLSGASAAPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=567648 MID12_RS22105 WP_263170193.1 5540071..5542293(+) (recD/recD2/recDB) [Streptomyces sp. SCSIO ZS0520]
ATGTCCGGTCTTTCGGTGGTCGAGGGCGTCCTCGAACGGATCACGTACGCCAATGAGGACAACGGCTACACGGTCGCCCG
CGTCGACACCGGCCGCGGCGCGGGGGACCTGCTGACCGTCGTCGGCTCGCTGCTCGGCGCGCAGCCGGGGGAGTCGCTGC
GGATGGAGGGCCGCTGGGGCTCGCACCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTGCTGCCCGCG
ACCATCCAGGGCATCCGGCGCTATCTCGGCTCCGGCCTGATCAAGGGCATCGGCCCGCGGATCGCCGACCGGATCACCGA
GCACTTCGGCCTGAAGACCCTCGACATCATCGAGGAGGAGCCGGGCCGCCTGGTCGAGGTGCCCGGGCTCGGTCCCAAGC
GCACCCGGCTGATCGGCGCGGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTGATGATCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCGGTGCGCATCTACAAGAAGTACGGCGACTCCTCCATCGACGTGGTGCGCCACCAGCCCTACCGGCT
CGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGTCCGTCGGCATCCCGCACGACAGCCCGG
AGCGGGTGATGGCGGGCATCCAGTACGCCCTGTCCCAGTCCACCGACCAGGGCCACTGCTTCCTGCCCGAGGAGCAACTC
CTCAGCGACGCCGTCAAGTTGCTCCAGGTGGACAGCCAGCTGGTCATCGAGTGCCTGGACCGCCTCGCCGCCCAGGACGA
GGGCGTGGTCCGCGAGCGGGTGCCGGGCCCCGAGGGCGGCGAGGAGGTCACCGCGGTCTATCTGGTGCCCTTCCACCGCG
CCGAACTCTCCCTGTCCGCCCAGGTGTTGCGGCTGCTGCGCACCGAGCAGGAGCGGCTGCCCGCCTTCGCGGAGGTCGAC
TGGGACAAGGCGCTCGGCTGGCTCGCCGCCCGTACCGGCACCGAACTCGCCCCGGAGCAGCGGGAAGCGGTACGCCTCGC
GCTCACCCGGCGGGTGGCGGTGCTGACCGGCGGTCCCGGCTGCGGCAAGTCCTTCACGGTGCGCTCGGTGGTGGAGCTGG
CCCGCGCCAAGCAGGCCAAGGTGGTCCTCGCCGCGCCCACCGGCCGGGCCGCCAAGCGCCTCGCCGAGCTGACCGGCGCC
GAGGCCTCCACCGTGCACCGGCTGCTCGAACTCAAGCCGGGCGGGGACGCCGCGTACGACAGGGACCGGCCGCTCGACGC
CGATCTGGTGGTGGTCGACGAGGCTTCCATGCTGGACCTGCTGCTCGCCAACAAGCTGGTCAAGGCGGTGCCGCCGGGCG
CGCACCTGCTCTTCGTCGGCGATGTGGACCAGCTGCCGAGCGTCGGCGCGGGTGAGGTGCTGCGCGATCTGCTGGCGCCC
GGCAGCCCGGTGCCCGCGGTGCGGCTGACCCGGATCTTCCGGCAGGCCCAGCAGTCCGGCGTGGTGACCAATGCGCACCG
CATCAACTCCGGTACGCCGCCGCTGACTTCGGGCCTGGACGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCGG
GCCGGCTCACCGTGGACGTCGCCGCCCGCCGCGTCCCCGCCCGCTTCGGCCTCGACCCGCGGCGCGACATCCAGGTCCTC
GCGCCCATGCACCGCGGCCCGGCGGGCGCGGGCACCCTCAACGGCCTGCTCCAGCAGGCGATCACGCCCGCCCGCCCGGA
CCTGCCGGAGAAGCGCTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGAGAAGG
GCGCCAACGGCGTCTTCAACGGCACCGTCGGCGTGGTCACCTCGCTCAGCACCGAGGACCAGCGGCTGACCGTACGCACC
GACGAGGACGAGGAGGTGCCCTACGACTTCGACGAACTCGACGAGCTGTCCCACGCCTACGCGGTCACCATCCACCGCTC
CCAGGGCAGCGAGTACCCGGCCGTCGTCATCCCGGTCACCATGAGCGCCTGGATGATGCTGCAGCGCAATCTGCTCTACA
CGGCGGTCACCCGCGCCAAGAAGCTTGTCGTCCTGGTCGGCTCCCGCCGGGCGCTCGGCCAGGCCGTGCGCACCCTCTCG
GCGGGCCGCCGCTGCACCGCCCTCGACTTCCGGCTCTCCGGGGCCTCCGCCGCGCCGCGCTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(335-514)

Helix-hairpin-helix domain (HHH_5)

(94-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369