Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KIV12_RS13910 Genome accession   NZ_CP075052
Coordinates   2731659..2732438 (-) Length   259 a.a.
NCBI ID   WP_058337353.1    Uniprot ID   -
Organism   Bacillus altitudinis strain LZP 02     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2726659..2737438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS13880 (KIV12_13880) fliH 2726770..2727534 (-) 765 WP_024720351.1 flagellar assembly protein FliH -
  KIV12_RS13885 (KIV12_13885) fliG 2727527..2728543 (-) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  KIV12_RS13890 (KIV12_13890) fliF 2728555..2730147 (-) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  KIV12_RS13895 (KIV12_13895) fliE 2730198..2730515 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  KIV12_RS13900 (KIV12_13900) flgC 2730527..2730979 (-) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  KIV12_RS13905 (KIV12_13905) flgB 2730979..2731368 (-) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  KIV12_RS13910 (KIV12_13910) codY 2731659..2732438 (-) 780 WP_058337353.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KIV12_RS13915 (KIV12_13915) hslU 2732473..2733873 (-) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  KIV12_RS13920 (KIV12_13920) hslV 2733890..2734435 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  KIV12_RS13925 (KIV12_13925) xerC 2734450..2735367 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  KIV12_RS13930 (KIV12_13930) trmFO 2735430..2736734 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29016.26 Da        Isoelectric Point: 4.6467

>NTDB_id=567416 KIV12_RS13910 WP_058337353.1 2731659..2732438(-) (codY) [Bacillus altitudinis strain LZP 02]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=567416 KIV12_RS13910 WP_058337353.1 2731659..2732438(-) (codY) [Bacillus altitudinis strain LZP 02]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTCAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTATTCGATCA
ACCAACAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATCAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGATCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTAGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCCCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.139

100

0.961
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475