Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SAFDA_RS06005 Genome accession   NZ_AP014942
Coordinates   1221082..1221855 (+) Length   257 a.a.
NCBI ID   WP_042727647.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216082..1226855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS05985 (SAFDA_1121) trmFO 1216426..1217733 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SAFDA_RS05990 (SAFDA_1122) xerC 1218150..1219046 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  SAFDA_RS05995 (SAFDA_1123) hslV 1219043..1219588 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SAFDA_RS06000 (SAFDA_1124) hslU 1219654..1221057 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SAFDA_RS06005 (SAFDA_1125) codY 1221082..1221855 (+) 774 WP_042727647.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SAFDA_RS06010 - 1221906..1221998 (+) 93 WP_001790530.1 hypothetical protein -
  SAFDA_RS06015 (SAFDA_1126) rpsB 1222197..1222964 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SAFDA_RS06020 - 1222998..1223111 (+) 114 WP_001789890.1 hypothetical protein -
  SAFDA_RS06025 (SAFDA_1127) tsf 1223146..1224027 (+) 882 WP_000201387.1 translation elongation factor Ts -
  SAFDA_RS06030 (SAFDA_1128) pyrH 1224164..1224886 (+) 723 WP_000057330.1 UMP kinase -
  SAFDA_RS06035 (SAFDA_1129) frr 1224905..1225459 (+) 555 WP_001280006.1 ribosome recycling factor -
  SAFDA_RS06040 (SAFDA_1130) - 1225832..1226602 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28785.16 Da        Isoelectric Point: 6.0680

>NTDB_id=56711 SAFDA_RS06005 WP_042727647.1 1221082..1221855(+) (codY) [Staphylococcus aureus strain FDA209P]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESASVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=56711 SAFDA_RS06005 WP_042727647.1 1221082..1221855(+) (codY) [Staphylococcus aureus strain FDA209P]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTAGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424

Multiple sequence alignment