Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPOK113_RS00095 Genome accession   NC_020508
Coordinates   13733..14014 (+) Length   93 a.a.
NCBI ID   WP_015427259.1    Uniprot ID   -
Organism   Helicobacter pylori OK113     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8733..19014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK113_RS00075 (HPOK113_0009) groES 9307..9663 (-) 357 WP_000671953.1 co-chaperone GroES -
  HPOK113_RS00080 (HPOK113_0010) dnaG 9939..11618 (+) 1680 WP_015427256.1 DNA primase -
  HPOK113_RS00085 (HPOK113_0011) - 11615..12667 (+) 1053 WP_015427257.1 MnmA/TRMU family protein -
  HPOK113_RS00090 (HPOK113_0012) - 12761..13588 (+) 828 WP_015427258.1 DUF5718 family protein -
  HPOK113_RS00095 (HPOK113_0013) comB2 13733..14014 (+) 282 WP_015427259.1 TrbC/VirB2 family protein Machinery gene
  HPOK113_RS00100 (HPOK113_0014) comB3 14014..14277 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HPOK113_RS00105 (HPOK113_0015) comB4 14279..16642 (+) 2364 WP_015427260.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPOK113_RS00110 (HPOK113_0016) - 16874..18304 (+) 1431 WP_162137771.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10529.77 Da        Isoelectric Point: 9.1450

>NTDB_id=56613 HPOK113_RS00095 WP_015427259.1 13733..14014(+) (comB2) [Helicobacter pylori OK113]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSSIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=56613 HPOK113_RS00095 WP_015427259.1 13733..14014(+) (comB2) [Helicobacter pylori OK113]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCTTAGAAGCCCAGCTCAAAAGCTCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment