Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JRY14_RS21120 Genome accession   NZ_CP074714
Coordinates   3910335..3911114 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain B13     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3885039..3946801 3910335..3911114 within 0


Gene organization within MGE regions


Location: 3885039..3946801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY14_RS21010 (JRY14_20980) - 3885610..3886509 (-) 900 WP_086411756.1 polysaccharide deacetylase family protein -
  JRY14_RS21015 (JRY14_20985) pnp 3886663..3888801 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  JRY14_RS21020 (JRY14_20990) rpsO 3888962..3889231 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  JRY14_RS21025 (JRY14_20995) ribF 3889332..3890303 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  JRY14_RS21030 (JRY14_21000) truB 3890347..3891270 (-) 924 WP_000399350.1 tRNA pseudouridine(55) synthase TruB -
  JRY14_RS21035 (JRY14_21005) rbfA 3891357..3891713 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  JRY14_RS21040 (JRY14_21010) - 3891729..3892010 (-) 282 WP_000582363.1 DUF503 family protein -
  JRY14_RS21045 (JRY14_21015) infB 3892007..3894067 (-) 2061 WP_000036343.1 translation initiation factor IF-2 -
  JRY14_RS21050 (JRY14_21020) - 3894072..3894383 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  JRY14_RS21055 (JRY14_21025) - 3894384..3894656 (-) 273 WP_000071127.1 YlxR family protein -
  JRY14_RS21060 (JRY14_21030) nusA 3894668..3895774 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  JRY14_RS21065 (JRY14_21035) rimP 3895792..3896262 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  JRY14_RS21070 (JRY14_21040) - 3896599..3900900 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  JRY14_RS21075 (JRY14_21045) - 3901025..3902725 (-) 1701 WP_000814300.1 proline--tRNA ligase -
  JRY14_RS21080 (JRY14_21050) rseP 3902835..3904091 (-) 1257 WP_001090243.1 RIP metalloprotease RseP -
  JRY14_RS21085 (JRY14_21055) dxr 3904109..3905251 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  JRY14_RS21090 (JRY14_21060) cdsA 3905275..3906066 (-) 792 WP_000813594.1 phosphatidate cytidylyltransferase -
  JRY14_RS21095 (JRY14_21065) uppS 3906084..3906860 (-) 777 WP_000971296.1 isoprenyl transferase -
  JRY14_RS21100 (JRY14_21070) frr 3906946..3907503 (-) 558 WP_000531501.1 ribosome recycling factor -
  JRY14_RS21105 (JRY14_21075) pyrH 3907506..3908228 (-) 723 WP_000042668.1 UMP kinase -
  JRY14_RS21110 (JRY14_21080) tsf 3908295..3909182 (-) 888 WP_001018578.1 translation elongation factor Ts -
  JRY14_RS21115 (JRY14_21085) rpsB 3909286..3909987 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  JRY14_RS21120 (JRY14_21090) codY 3910335..3911114 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JRY14_RS21125 (JRY14_21095) hslU 3911192..3912583 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  JRY14_RS21130 (JRY14_21100) hslV 3912606..3913148 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  JRY14_RS21135 (JRY14_21105) xerC 3913191..3914090 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  JRY14_RS21140 (JRY14_21110) trmFO 3914156..3915460 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JRY14_RS21145 (JRY14_21115) topA 3915509..3917587 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  JRY14_RS21150 (JRY14_21120) dprA 3917732..3918601 (-) 870 WP_000818043.1 DNA-processing protein DprA -
  JRY14_RS21155 (JRY14_21125) sucD 3918690..3919592 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  JRY14_RS21160 (JRY14_21130) sucC 3919612..3920772 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  JRY14_RS21165 (JRY14_21135) - 3920967..3921740 (-) 774 WP_001194265.1 ribonuclease HII -
  JRY14_RS21170 (JRY14_21140) ylqF 3921797..3922687 (-) 891 WP_000236704.1 ribosome biogenesis GTPase YlqF -
  JRY14_RS21175 (JRY14_21145) lepB 3922708..3923259 (-) 552 WP_000711853.1 signal peptidase I -
  JRY14_RS21180 (JRY14_21150) rplS 3923361..3923705 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  JRY14_RS21185 (JRY14_21155) trmD 3923852..3924586 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  JRY14_RS21190 (JRY14_21160) rimM 3924586..3925101 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  JRY14_RS21195 (JRY14_21165) - 3925223..3925450 (-) 228 WP_000737401.1 KH domain-containing protein -
  JRY14_RS21200 (JRY14_21170) rpsP 3925465..3925737 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  JRY14_RS21205 (JRY14_21175) ffh 3925839..3927188 (-) 1350 WP_000863460.1 signal recognition particle protein -
  JRY14_RS21210 (JRY14_21180) - 3927201..3927533 (-) 333 WP_000891062.1 putative DNA-binding protein -
  JRY14_RS21215 (JRY14_21185) ftsY 3927667..3928656 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  JRY14_RS21220 (JRY14_21190) smc 3928672..3932241 (-) 3570 WP_086411757.1 chromosome segregation protein SMC -
  JRY14_RS21225 (JRY14_21195) rncS 3932388..3933125 (-) 738 WP_001146875.1 ribonuclease III -
  JRY14_RS21230 (JRY14_21200) acpP 3933184..3933417 (-) 234 WP_000786062.1 acyl carrier protein -
  JRY14_RS21235 (JRY14_21205) fabG 3933487..3934227 (-) 741 WP_000911773.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  JRY14_RS21240 (JRY14_21210) fabD 3934227..3935171 (-) 945 WP_086411758.1 ACP S-malonyltransferase -
  JRY14_RS21245 (JRY14_21215) plsX 3935186..3936178 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  JRY14_RS21250 (JRY14_21220) fapR 3936175..3936768 (-) 594 WP_000747348.1 transcription factor FapR -
  JRY14_RS21255 (JRY14_21225) recG 3936857..3938905 (-) 2049 WP_086411759.1 ATP-dependent DNA helicase RecG -
  JRY14_RS21260 (JRY14_21230) - 3939196..3940872 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  JRY14_RS21265 (JRY14_21235) - 3940895..3941257 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  JRY14_RS21270 (JRY14_21240) rpmB 3941634..3941822 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  JRY14_RS21275 (JRY14_21245) spoVM 3941896..3941976 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  JRY14_RS21280 (JRY14_21250) - 3942043..3942723 (-) 681 WP_140159354.1 thiamine diphosphokinase -
  JRY14_RS21285 (JRY14_21255) rpe 3942793..3943437 (-) 645 WP_086411761.1 ribulose-phosphate 3-epimerase -
  JRY14_RS21290 (JRY14_21260) rsgA 3943440..3944321 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  JRY14_RS21295 (JRY14_21265) pknB 3944568..3946541 (-) 1974 WP_086411762.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=565983 JRY14_RS21120 WP_000421290.1 3910335..3911114(-) (codY) [Bacillus thuringiensis strain B13]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=565983 JRY14_RS21120 WP_000421290.1 3910335..3911114(-) (codY) [Bacillus thuringiensis strain B13]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459