Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MKD47_RS01200 Genome accession   NZ_CP092533
Coordinates   270409..271173 (-) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain DS566-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 265409..276173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD47_RS01185 (MKD47_01185) yhhJ 268066..269190 (+) 1125 WP_001314210.1 ABC transporter permease -
  MKD47_RS01190 (MKD47_01190) nikR 269199..269600 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  MKD47_RS01195 (MKD47_01195) nikE 269606..270412 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  MKD47_RS01200 (MKD47_01200) amiE 270409..271173 (-) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  MKD47_RS01205 (MKD47_01205) nikC 271173..272006 (-) 834 WP_001008955.1 nickel ABC transporter permease subunit NikC -
  MKD47_RS01210 (MKD47_01210) nikB 272003..272947 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  MKD47_RS01215 (MKD47_01215) nikA 272947..274521 (-) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  MKD47_RS01220 (MKD47_01220) acpT 274632..275219 (-) 588 WP_000285790.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=565672 MKD47_RS01200 WP_001136232.1 270409..271173(-) (amiE) [Escherichia coli strain DS566-1]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=565672 MKD47_RS01200 WP_001136232.1 270409..271173(-) (amiE) [Escherichia coli strain DS566-1]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGAATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398