Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KIH05_RS17985 Genome accession   NZ_CP074585
Coordinates   3751673..3752233 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3746673..3757233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH05_RS17975 (KIH05_17925) pilX 3749856..3750674 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KIH05_RS17980 (KIH05_17930) pilW 3750671..3751672 (-) 1002 WP_000079195.1 PilW family protein Machinery gene
  KIH05_RS17985 (KIH05_17935) pilV 3751673..3752233 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KIH05_RS17990 (KIH05_17940) fimU 3752227..3752700 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KIH05_RS17995 (KIH05_17945) ispH 3752870..3753820 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KIH05_RS18000 (KIH05_17950) gmk 3753943..3754572 (+) 630 WP_000015937.1 guanylate kinase -
  KIH05_RS18005 (KIH05_17955) rpoZ 3754645..3754923 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KIH05_RS18010 (KIH05_17960) - 3754962..3755092 (+) 131 Protein_3509 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=565502 KIH05_RS17985 WP_002194578.1 3751673..3752233(-) (pilV) [Acinetobacter baumannii strain ATCC 19606]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=565502 KIH05_RS17985 WP_002194578.1 3751673..3752233(-) (pilV) [Acinetobacter baumannii strain ATCC 19606]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414