Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MKD48_RS08310 Genome accession   NZ_CP092475
Coordinates   1615897..1616670 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain P5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610897..1621670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS08275 - 1611150..1611920 (-) 771 WP_000473699.1 isoprenyl transferase -
  MKD48_RS08280 frr 1612293..1612847 (-) 555 WP_001280005.1 ribosome recycling factor -
  MKD48_RS08285 pyrH 1612866..1613588 (-) 723 WP_000057330.1 UMP kinase -
  MKD48_RS08290 tsf 1613725..1614606 (-) 882 WP_000201387.1 translation elongation factor Ts -
  MKD48_RS08295 - 1614641..1614754 (-) 114 WP_001789890.1 hypothetical protein -
  MKD48_RS08300 rpsB 1614788..1615555 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  MKD48_RS08305 - 1615754..1615846 (-) 93 WP_031788481.1 hypothetical protein -
  MKD48_RS08310 codY 1615897..1616670 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MKD48_RS08315 hslU 1616695..1618098 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  MKD48_RS08320 hslV 1618164..1618709 (-) 546 WP_000072678.1 ATP-dependent protease subunit HslV -
  MKD48_RS08325 xerC 1618706..1619602 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  MKD48_RS08330 trmFO 1620019..1621326 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=565394 MKD48_RS08310 WP_000055337.1 1615897..1616670(-) (codY) [Staphylococcus aureus strain P5]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=565394 MKD48_RS08310 WP_000055337.1 1615897..1616670(-) (codY) [Staphylococcus aureus strain P5]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428