Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SITYG_RS06795 Genome accession   NZ_AP014880
Coordinates   1340747..1342516 (-) Length   589 a.a.
NCBI ID   WP_096363000.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335747..1347516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS10640 - 1335988..1336836 (-) 849 Protein_1310 homoserine O-succinyltransferase -
  SITYG_RS06765 (SITYG_13370) - 1336941..1337453 (-) 513 WP_096362999.1 adenine phosphoribosyltransferase -
  SITYG_RS06770 (SITYG_13380) - 1337577..1338272 (-) 696 WP_003072176.1 LrgB family protein -
  SITYG_RS06775 (SITYG_13390) - 1338265..1338645 (-) 381 WP_041787389.1 CidA/LrgA family protein -
  SITYG_RS06790 (SITYG_13410) - 1339373..1340374 (+) 1002 WP_021002542.1 YdcF family protein -
  SITYG_RS06795 (SITYG_13420) rcrQ 1340747..1342516 (-) 1770 WP_096363000.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS06800 (SITYG_13430) - 1342526..1344262 (-) 1737 WP_082312263.1 ABC transporter ATP-binding protein -
  SITYG_RS06805 (SITYG_13440) endA 1344416..1345261 (-) 846 WP_096363001.1 DNA/RNA non-specific endonuclease Machinery gene
  SITYG_RS06810 (SITYG_13450) - 1345324..1345500 (-) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  SITYG_RS06815 (SITYG_13460) murA 1345493..1346773 (-) 1281 WP_096363002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SITYG_RS06820 (SITYG_13470) - 1346811..1347041 (-) 231 WP_014829739.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66161.28 Da        Isoelectric Point: 5.3578

>NTDB_id=56535 SITYG_RS06795 WP_096363000.1 1340747..1342516(-) (rcrQ) [Streptococcus intermedius strain TYG1620]
MKQHSFMRLWSYLKVYKLSVILAIFLKVVSIVMSVLEPFVLGLAITELTRNVLDIAKGVEGASINTTYVFWVMALYLLRG
LFYEIGAYYSNYFMTNAVQNTVRDMRNELSSKINQIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVLTITL
VIGMVLYLNFQLALIVIASIPLTYFGATFILKKSQPYFKQQADTLGVMNGFVQENLTGFNVLKLYGREETSSDDFREITQ
NLQEVGFKASFISGLMMPILNAISDLTYLLVAVVGGLQVISGQLTIGNMQAFVQYVWQVNQPIQNLTQLAGQLQSAKSSL
DRIFQVLDEPDEVTDIKEQLEHDLTGQVSFQHVDFQYVESKPLIRNFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYDV
TAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLYEGTVKDNLRFGNLSATDEEIVDAAKAANVDHFIRTLPGGYNMEMNQ
ESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKNLMQGRTSFVIAHRLSTIQEADKILVLKDGQI
IEQGTHESLLADRGFYYDLYTSQFAKKEA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=56535 SITYG_RS06795 WP_096363000.1 1340747..1342516(-) (rcrQ) [Streptococcus intermedius strain TYG1620]
ATGAAACAACATAGTTTTATGCGTTTGTGGAGTTACTTAAAAGTTTATAAACTCTCAGTAATCCTTGCTATCTTTTTGAA
GGTGGTGAGTATTGTGATGAGCGTGCTGGAGCCTTTTGTACTTGGTCTTGCTATTACAGAATTGACACGAAATGTGCTGG
ACATAGCAAAAGGAGTCGAAGGCGCCAGTATAAACACAACATATGTCTTTTGGGTAATGGCACTTTACCTTTTGCGTGGC
TTGTTCTATGAAATTGGGGCTTACTATTCTAATTATTTTATGACCAATGCAGTGCAAAATACAGTACGTGACATGCGCAA
TGAGTTGAGTTCTAAAATTAATCAAATTCCAGTTTCTTACTTTGATAAGCATCAATTTGGAGATTTGCTAGGGCGCTTTA
CCAGTGATGTAGAGACTGTCTCAAATGCGCTTCAACAATCATTCTTACAAGTTGTAAATGCGGTTTTGACCATTACCTTA
GTTATCGGAATGGTCTTGTATCTTAATTTTCAACTGGCTTTGATAGTGATTGCTAGCATTCCGTTGACCTATTTTGGGGC
GACCTTTATTTTGAAAAAATCACAACCATATTTTAAACAGCAAGCAGATACGCTAGGTGTCATGAATGGATTTGTTCAAG
AAAATCTAACTGGTTTTAATGTGCTGAAACTCTATGGTCGTGAAGAAACATCTTCAGACGATTTTCGAGAAATCACGCAA
AACCTCCAAGAAGTCGGGTTCAAAGCTAGTTTTATTTCTGGCTTGATGATGCCAATTTTGAACGCAATTTCAGATTTGAC
TTATCTGCTTGTAGCAGTTGTTGGTGGTTTGCAAGTCATTTCTGGACAATTAACAATTGGGAACATGCAAGCTTTTGTAC
AATATGTATGGCAAGTAAACCAACCAATTCAAAATTTAACGCAGTTAGCTGGGCAATTACAAAGTGCTAAGTCTTCGCTG
GATCGTATTTTCCAAGTCTTAGATGAACCAGACGAAGTAACGGATATAAAAGAGCAATTAGAACATGATTTGACAGGACA
GGTTAGTTTTCAACATGTTGATTTTCAATATGTGGAAAGCAAACCGCTCATTCGCAACTTCAATTTGGAGGTAAAGCCGG
GTGAAATGGTAGCAATTGTCGGTCCGACCGGTGCTGGAAAGACCACCCTCATCAATCTACTTATGCGCTTTTACGATGTA
ACAGCAGGTTCAATTTCTGTTGATGGTCACGATATTCGTAACTTATCGCGCCAAGATTACCGCAAGCAATTTGGCATGGT
CTTGCAAGACGCTTGGCTCTATGAAGGAACAGTCAAGGATAATTTGCGTTTTGGAAATCTGAGTGCAACAGATGAAGAAA
TTGTGGACGCTGCCAAAGCTGCTAATGTAGATCATTTCATTCGGACACTCCCAGGTGGCTATAATATGGAAATGAATCAG
GAATCTAGCAATATCTCGCTGGGGCAAAAACAATTATTGACCATTGCGCGAGCACTATTGGCAAATCCCAAAATCTTAAT
TTTGGATGAAGCAACCTCGTCAGTTGATACGCGCTTAGAGCTCTTGATTCAAAAAGCGATGAAGAACCTCATGCAAGGAC
GGACAAGCTTTGTCATTGCTCACCGCTTATCGACAATTCAAGAAGCTGATAAAATTTTAGTCCTTAAAGACGGACAAATT
ATTGAACAAGGAACTCATGAATCACTTCTAGCTGATAGAGGCTTCTATTATGATTTATATACAAGCCAATTTGCTAAGAA
AGAAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-302)

ABC transporter (ABC_tran)

(365-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.771

100

0.441

Multiple sequence alignment