Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KIH94_RS08645 Genome accession   NZ_CP074571
Coordinates   1655041..1655820 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain BYS2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650041..1660820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS08625 (KIH94_08625) trmFO 1650734..1652041 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KIH94_RS08630 (KIH94_08630) xerC 1652109..1653023 (+) 915 WP_015383656.1 tyrosine recombinase XerC -
  KIH94_RS08635 (KIH94_08635) clpQ 1653036..1653581 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  KIH94_RS08640 (KIH94_08640) hslU 1653598..1655001 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  KIH94_RS08645 (KIH94_08645) codY 1655041..1655820 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KIH94_RS08650 (KIH94_08650) flgB 1656200..1656589 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  KIH94_RS08655 (KIH94_08655) flgC 1656589..1657041 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  KIH94_RS08660 (KIH94_08660) fliE 1657052..1657372 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  KIH94_RS08665 (KIH94_08665) fliF 1657418..1659028 (+) 1611 WP_015483223.1 flagellar basal-body MS-ring/collar protein FliF -
  KIH94_RS08670 (KIH94_08670) fliG 1659041..1660057 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  KIH94_RS08675 (KIH94_08675) fliH 1660050..1660802 (+) 753 WP_015383659.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=565300 KIH94_RS08645 WP_003220850.1 1655041..1655820(+) (codY) [Bacillus subtilis strain BYS2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=565300 KIH94_RS08645 WP_003220850.1 1655041..1655820(+) (codY) [Bacillus subtilis strain BYS2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467