Detailed information NTG0056530

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: SITYG_RS05595
• Genome accession: NZ_AP014880
• Coordinates: 1105219..1107054 (-)
• Length: 611 a.a.
• NCBI ID: WP_096362378.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain TYG1620
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1100219..1112054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SITYG_RS05570 (SITYG_10900)	-	1100244..1100666 (-)	423	WP_096362382.1	single-stranded DNA-binding protein	-
SITYG_RS05575 (SITYG_10910)	-	1100668..1102869 (-)	2202	WP_096362381.1	GbpC/Spa domain-containing protein	-
SITYG_RS05580 (SITYG_10920)	-	1102895..1103671 (-)	777	WP_096362380.1	peptidase	-
SITYG_RS05585 (SITYG_10930)	-	1103690..1104757 (-)	1068	WP_096362379.1	hypothetical protein	-
SITYG_RS05590 (SITYG_10940)	-	1104771..1105118 (-)	348	WP_003078042.1	TrbC/VirB2 family protein	-
SITYG_RS05595 (SITYG_10950)	clpE	1105219..1107054 (-)	1836	WP_096362378.1	AAA family ATPase	Regulator
SITYG_RS05600 (SITYG_10960)	-	1107051..1108805 (-)	1755	WP_096362377.1	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69104.98 Da
• Isoelectric Point: 5.0861

>NTDB_id=56530 SITYG_RS05595 WP_096362378.1 1105219..1107054(-) (clpE) [Streptococcus intermedius strain TYG1620]
MNQASKTPFLDQFTENLSQKISQKPKDYQVYGREEEIQAVIISLCRRTKNNPILIGEPGVGKTAILEGLALEILQDRVSE
TLKGLTVRSLELSSLMNESEGSFITKLKNIIDELKKTPGQNLLFIDEFHTVVGAGSQNGESLDAGNVLKPSLSRGEIQLI
GATTLDEFHEYIEQDRALERRTQPILIKEPTIAQAIEIVGQAKEIYEDYHNVSISHEAVCQAVKLSTRYIPDRFLPDKAF
DLLDEAATIVSSKGQELVTEREIAEVLKKQTGIPVTTVLKGNKERLDALEEKLHQRVKGQDEAIKAVVEVIKISQAGMQD
ENKPIGSLLFLGTTGVGKTELSKALAEGLFDDEEALIRFDMSEYSQKGDVTKLIGDRNRRSKGLLTEGVKRKPYSVILLD
EIEKAHPDIYDLLLQVIDDGRLTDATGRLVSFKNTIVIMTTNIGQEKLLTKAAMKGSLRHLTEREQIQFEASMEIELKTE
FRPEFLNRIEYKVIFNLLEREDLEEIVEKNMKEIEERTKKRGLFLSYDPAVLDYLVDLGTDSKNGARPLERLLKRKVQAP
ISDIILKLSNTETYQYMVHIQVEGEKDSENPRKDPRQLHFDIFKHSNDLFN

Nucleotide

• Length: 1836 bp

>NTDB_id=56530 SITYG_RS05595 WP_096362378.1 1105219..1107054(-) (clpE) [Streptococcus intermedius strain TYG1620]
TTGAATCAGGCATCAAAGACTCCTTTTTTAGACCAATTTACAGAGAATTTATCTCAAAAAATTAGTCAAAAGCCAAAGGA
TTATCAAGTGTACGGAAGAGAAGAAGAAATTCAAGCTGTTATTATCTCTCTTTGCAGACGAACGAAGAATAATCCTATCT
TGATTGGTGAACCTGGTGTTGGGAAAACAGCAATTTTAGAAGGATTAGCTTTGGAAATCTTACAAGATCGTGTTTCCGAA
ACATTAAAAGGCTTAACTGTCCGTTCCCTTGAATTGTCTAGTTTAATGAATGAGAGCGAAGGAAGTTTTATCACAAAACT
GAAAAACATCATTGATGAATTAAAGAAAACTCCTGGTCAAAATCTACTCTTTATTGATGAATTTCATACAGTGGTCGGTG
CTGGGAGTCAGAATGGAGAATCACTAGATGCAGGAAATGTTTTGAAACCTTCTTTGTCTCGTGGAGAAATTCAGTTGATT
GGTGCTACTACATTAGATGAATTTCATGAGTATATTGAACAAGATCGTGCTTTGGAACGCAGAACCCAACCAATTCTCAT
TAAAGAGCCAACAATTGCACAAGCGATTGAAATTGTGGGACAAGCAAAAGAAATTTATGAAGACTATCATAATGTTTCAA
TCAGTCATGAAGCTGTTTGTCAAGCCGTGAAACTATCTACCCGTTATATTCCTGATCGCTTTCTTCCTGATAAAGCTTTT
GATTTGCTAGATGAGGCTGCTACTATAGTTTCTTCAAAGGGACAAGAACTTGTTACAGAACGGGAAATAGCAGAAGTGCT
GAAGAAGCAAACTGGTATTCCAGTAACTACTGTTTTAAAGGGAAACAAAGAACGCTTAGATGCTTTAGAAGAAAAGCTTC
ATCAGCGAGTAAAAGGACAAGATGAAGCTATCAAAGCTGTTGTAGAAGTGATTAAAATTAGTCAAGCTGGAATGCAAGAC
GAAAACAAGCCAATTGGATCTCTTCTTTTCTTAGGAACAACTGGAGTTGGGAAAACCGAATTGTCAAAAGCTCTTGCTGA
AGGATTATTTGATGATGAAGAAGCGTTGATTCGATTTGATATGTCAGAATACTCTCAAAAAGGTGATGTCACTAAATTGA
TTGGAGATAGAAATCGTAGAAGTAAGGGACTTTTAACAGAAGGAGTCAAAAGAAAACCTTATTCCGTTATTTTGCTTGAT
GAAATTGAAAAAGCTCATCCAGACATCTATGATCTTCTTCTTCAGGTGATTGATGATGGTCGATTAACGGATGCGACCGG
AAGATTAGTCAGTTTCAAAAATACTATTGTGATTATGACAACGAATATTGGTCAAGAAAAGCTTTTGACAAAAGCGGCTA
TGAAAGGCAGTCTTCGTCATTTAACAGAACGGGAACAAATTCAATTTGAAGCTAGCATGGAAATTGAACTCAAAACAGAA
TTTCGTCCTGAATTTTTAAATCGAATTGAATACAAAGTGATTTTCAATTTACTTGAAAGAGAAGATTTAGAAGAAATAGT
GGAGAAAAATATGAAAGAAATCGAGGAACGGACGAAGAAAAGGGGACTGTTCTTATCTTATGACCCAGCTGTTCTGGATT
ATTTAGTGGATCTTGGAACAGATTCTAAAAATGGTGCTCGTCCACTTGAACGATTATTGAAAAGAAAAGTTCAAGCTCCT
ATTTCAGATATTATTTTAAAACTTTCAAATACTGAAACTTACCAATACATGGTTCATATTCAAGTAGAGGGAGAAAAAGA
TTCCGAAAATCCCCGAAAAGACCCTCGTCAATTGCATTTTGATATTTTTAAACATTCGAATGACTTATTCAACTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (323-490)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-167)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (498-567)

• AAA lid domain (AAA_lid_9) (192-261)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus pneumoniae Rx1	39.286	100	0.414
clpE	Streptococcus pneumoniae TIGR4	39.286	100	0.414
clpE	Streptococcus pneumoniae R6	39.286	100	0.414
clpE	Streptococcus pneumoniae D39	39.286	100	0.414
clpE	Streptococcus mutans UA159	40.256	100	0.412
clpC	Streptococcus thermophilus LMD-9	41.653	99.018	0.412
clpC	Streptococcus thermophilus LMG 18311	41.488	99.018	0.411
clpC	Streptococcus mutans UA159	40.291	100	0.408
clpC	Lactococcus lactis subsp. cremoris KW2	39.553	100	0.406
clpC	Streptococcus pneumoniae Rx1	40.698	98.527	0.401
clpC	Streptococcus pneumoniae D39	40.698	98.527	0.401
clpC	Streptococcus pneumoniae TIGR4	40.698	98.527	0.401
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	38.08	100	0.39