Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MJJ13_RS01325 Genome accession   NZ_CP092449
Coordinates   276917..277681 (-) Length   254 a.a.
NCBI ID   WP_001136249.1    Uniprot ID   -
Organism   Escherichia coli isolate TKEC21-17     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 271917..282681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJJ13_RS01315 (MJJ13_01310) nikR 275707..276108 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  MJJ13_RS01320 (MJJ13_01315) nikE 276114..276920 (-) 807 WP_000173663.1 nickel import ATP-binding protein NikE -
  MJJ13_RS01325 (MJJ13_01320) amiE 276917..277681 (-) 765 WP_001136249.1 nickel import ATP-binding protein NikD Regulator
  MJJ13_RS01330 (MJJ13_01325) nikC 277681..278514 (-) 834 WP_032248177.1 nickel ABC transporter permease subunit NikC -
  MJJ13_RS01335 (MJJ13_01330) nikB 278511..279455 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  MJJ13_RS01340 (MJJ13_01335) nikA 279455..281029 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  MJJ13_RS01345 (MJJ13_01340) acpT 281140..281727 (-) 588 WP_032248176.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26831.45 Da        Isoelectric Point: 6.5992

>NTDB_id=565185 MJJ13_RS01325 WP_001136249.1 276917..277681(-) (amiE) [Escherichia coli isolate TKEC21-17]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAVALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=565185 MJJ13_RS01325 WP_001136249.1 276917..277681(-) (amiE) [Escherichia coli isolate TKEC21-17]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGTGGCGCTGGGAATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398