Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LILO_RS10385 Genome accession   NC_020450
Coordinates   2163289..2164227 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   A0A2A9ILQ4
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2158289..2169227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS10360 (lilo_1998) frr 2158406..2158963 (-) 558 WP_004254618.1 ribosome recycling factor -
  LILO_RS10365 (lilo_1999) pyrH 2159175..2159891 (-) 717 WP_004254608.1 UMP kinase -
  LILO_RS10370 (lilo_2000) - 2159976..2160428 (-) 453 WP_012898517.1 hypothetical protein -
  LILO_RS10375 (lilo_2001) - 2160562..2161749 (-) 1188 WP_015427114.1 acetate kinase -
  LILO_RS10380 (lilo_2002) - 2161906..2163093 (-) 1188 WP_012898519.1 acetate kinase -
  LILO_RS10385 (lilo_2003) comYH 2163289..2164227 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  LILO_RS10390 (lilo_2004) - 2164315..2164566 (-) 252 WP_004254583.1 DUF3165 family protein -
  LILO_RS10395 (lilo_2005) typA 2164667..2166499 (-) 1833 WP_025016832.1 translational GTPase TypA -
  LILO_RS10400 (lilo_2006) - 2166687..2167145 (-) 459 WP_015427115.1 hypothetical protein -
  LILO_RS10405 (lilo_2007) - 2167147..2167551 (-) 405 WP_015427116.1 hypothetical protein -
  LILO_RS12285 (lilo_2008) - 2167570..2168361 (-) 792 WP_015427117.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=56485 LILO_RS10385 WP_012898520.1 2163289..2164227(-) (comYH) [Lactococcus lactis subsp. lactis IO-1]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=56485 LILO_RS10385 WP_012898520.1 2163289..2164227(-) (comYH) [Lactococcus lactis subsp. lactis IO-1]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCTGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCTCTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A9ILQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment