Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AH5611_RS07695 Genome accession   NZ_CP092055
Coordinates   1607900..1609174 (+) Length   424 a.a.
NCBI ID   WP_000102740.1    Uniprot ID   -
Organism   Staphylococcus aureus strain USA600     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1602900..1614174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH5611_RS07665 (AH5611_001487) mnmA 1603102..1604220 (-) 1119 WP_000066103.1 tRNA 2-thiouridine(34) synthase MnmA -
  AH5611_RS07670 (AH5611_001488) - 1604221..1605363 (-) 1143 WP_000409161.1 cysteine desulfurase family protein -
  AH5611_RS07675 (AH5611_001489) - 1605675..1606688 (+) 1014 WP_000985881.1 LLM class flavin-dependent oxidoreductase -
  AH5611_RS07680 (AH5611_001490) - 1606925..1607071 (-) 147 WP_164046448.1 SAS049 family protein -
  AH5611_RS07685 (AH5611_001491) - 1607111..1607293 (-) 183 WP_000752909.1 CsbD family protein -
  AH5611_RS07690 (AH5611_001492) - 1607393..1607815 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  AH5611_RS07695 (AH5611_001493) rarA 1607900..1609174 (+) 1275 WP_000102740.1 replication-associated recombination protein A Machinery gene
  AH5611_RS07700 (AH5611_001494) - 1609335..1610108 (-) 774 WP_000682645.1 tRNA threonylcarbamoyladenosine dehydratase -
  AH5611_RS07705 - 1610108..1610236 (-) 129 WP_001827648.1 hypothetical protein -
  AH5611_RS07715 (AH5611_001495) aspS 1610568..1612334 (-) 1767 WP_000044803.1 aspartate--tRNA ligase -
  AH5611_RS07720 (AH5611_001496) hisS 1612350..1613612 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47264.84 Da        Isoelectric Point: 8.3539

>NTDB_id=564827 AH5611_RS07695 WP_000102740.1 1607900..1609174(+) (rarA) [Staphylococcus aureus strain USA600]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=564827 AH5611_RS07695 WP_000102740.1 1607900..1609174(+) (rarA) [Staphylococcus aureus strain USA600]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATAGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATCCATCGACTAGATAAAGC
CAAACAAGATTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAATTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGCTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAGGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCCATCCGTGGTAGTGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGACCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686