Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KHA81_RS08580 Genome accession   NZ_CP074391
Coordinates   1689491..1690270 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain L-17     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684491..1695270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS08560 trmFO 1685178..1686485 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KHA81_RS08565 xerC 1686555..1687472 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  KHA81_RS08570 hslV 1687488..1688033 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  KHA81_RS08575 hslU 1688050..1689453 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  KHA81_RS08580 codY 1689491..1690270 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KHA81_RS08585 flgB 1690624..1691013 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  KHA81_RS08590 flgC 1691013..1691465 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  KHA81_RS08595 fliE 1691476..1691796 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  KHA81_RS08600 fliF 1691839..1693449 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  KHA81_RS08605 fliG 1693462..1694478 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  KHA81_RS08610 fliH 1694471..1695226 (+) 756 WP_015388237.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=564551 KHA81_RS08580 WP_003154263.1 1689491..1690270(+) (codY) [Bacillus amyloliquefaciens strain L-17]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=564551 KHA81_RS08580 WP_003154263.1 1689491..1690270(+) (codY) [Bacillus amyloliquefaciens strain L-17]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471