Detailed information NTG0564539

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: MCS25_RS05030
• Genome accession: NZ_CP092048
• Coordinates: 1174942..1176246 (+)
• Length: 434 a.a.
• NCBI ID: WP_010956212.1
• Uniprot ID: Q7MVG1
• Organism: Porphyromonas gingivalis strain W50
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1169942..1181246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MCS25_RS05020 (MCS25_05025)	-	1170296..1171756 (-)	1461	WP_005873636.1	sodium:solute symporter	-
MCS25_RS05025 (MCS25_05030)	-	1172147..1174795 (-)	2649	WP_230455974.1	DUF5686 and carboxypeptidase-like regulatory domain-containing protein	-
MCS25_RS05030 (MCS25_05035)	rarA	1174942..1176246 (+)	1305	WP_010956212.1	replication-associated recombination protein A	Machinery gene
MCS25_RS05035 (MCS25_05040)	-	1176272..1177039 (+)	768	WP_005873692.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
MCS25_RS05040 (MCS25_05045)	rpoN	1177003..1178460 (-)	1458	WP_005873663.1	RNA polymerase factor sigma-54	-
MCS25_RS05045 (MCS25_05050)	murF	1178454..1179758 (-)	1305	WP_005873680.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	-

Sequence

Protein

• Length: 434 a.a.
• Molecular weight: 48303.17 Da
• Isoelectric Point: 5.6527

>NTDB_id=564539 MCS25_RS05030 WP_010956212.1 1174942..1176246(+) (rarA) [Porphyromonas gingivalis strain W50]
MKQIPLAERMRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKE
VREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQS
DEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKLLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGG
ELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISASEDIGLANPNAMLIAMACAEALDRIGWPEGRIP
LAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAANT
SFWTPQMHTVHEAKLGERMKRWWKREKSQKDTAE

Nucleotide

• Length: 1305 bp

>NTDB_id=564539 MCS25_RS05030 WP_010956212.1 1174942..1176246(+) (rarA) [Porphyromonas gingivalis strain W50]
ATGAAACAAATACCCTTGGCCGAGAGAATGCGTCCAAAAACGCTGGCCGACTATGTGGGGCAGCAGCATCTGATCGGATC
GGGGGCTGTGCTCCGGCAGATGATCGAGCAGGGACAGACGCCATCCATGATCCTGTGGGGGCCTCCCGGAGTAGGCAAGA
CTACGCTGGCCGAAATCATCGCTCATGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTTAGCTCCGGTGTGAAGGAA
GTGCGGGAAGTAATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAAGGAGGACGCGCCATCCTCTTCATCGA
CGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCACTTCTGGCAGCCGTAGAGCGAGGAATAGTGACGCTGATCGGTG
CCACGACCGAAAATCCGAGTTTCGAAGTAATACGTCCGCTCCTATCGCGCTGTCAGGTCTATGTGCTCAAACCCCAAAGT
GATGAGGATCTGCTGCTACTGGCACACAGGGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGA
GACGGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCACGAAAGCTGCTGAACATCCTCGACCTTCTGGCCACAAGCGAAG
TGGAAGACCGGCTCGTCATTACCAACGAAAAGATACGTCAGCGCTTGCAAGAAAACCCCGCTGCTTTCGACAAGGGAGGC
GAACTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGACGCGGCTATTTACTGGCTGGC
GCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTTCGGAAGACATCGGCCTGG
CTAATCCGAATGCCATGCTCATCGCCATGGCCTGTGCCGAGGCTTTAGACCGAATCGGCTGGCCTGAAGGCCGTATTCCA
TTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATA
TGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACTTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATG
GCAAGGGTTACAAATACTCGCATGATTTTCCGGAACACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTAACACC
TCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAA
ATCCCAAAAGGATACAGCAGAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (10-131)

• MgsA AAA+ ATPase C terminal (MgsA_C) (256-423)

3D structure

• AlphaFold DB: Q7MVG1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.187	98.618	0.396