Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DYR29_RS11200 Genome accession   NZ_CP074372
Coordinates   2478766..2479419 (+) Length   217 a.a.
NCBI ID   WP_213280528.1    Uniprot ID   -
Organism   Chryseobacterium indologenes strain PgBE177     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2473766..2484419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYR29_RS11185 aceA 2473875..2475155 (-) 1281 WP_213280525.1 isocitrate lyase -
  DYR29_RS11190 aceB 2475269..2476843 (-) 1575 WP_213280526.1 malate synthase A -
  DYR29_RS11195 - 2476970..2478448 (+) 1479 WP_213280527.1 helix-turn-helix transcriptional regulator -
  DYR29_RS11200 comF 2478766..2479419 (+) 654 WP_213280528.1 double zinc ribbon domain-containing protein Machinery gene
  DYR29_RS11205 - 2479590..2480276 (+) 687 WP_213280529.1 alpha/beta hydrolase -
  DYR29_RS11210 upp 2480278..2480928 (-) 651 WP_213280530.1 uracil phosphoribosyltransferase -
  DYR29_RS11215 der 2481166..2482476 (-) 1311 WP_213280531.1 ribosome biogenesis GTPase Der -
  DYR29_RS11225 - 2483063..2483314 (+) 252 WP_213280532.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25233.16 Da        Isoelectric Point: 7.4540

>NTDB_id=564339 DYR29_RS11200 WP_213280528.1 2478766..2479419(+) (comF) [Chryseobacterium indologenes strain PgBE177]
MILDILFPNRCIHCNRIIDPELLVCDLCFSQIYFTHYSYFENNPIKEKCSLFFPVENTFALLQFEEESLSRQIIHELKYK
SREKAGKIIANWTTERLDFKNEKPDLLVSVPLHPKKLKERGYNQLHLFTETLSAFYDIPFDHQLIKRNHYSKAQALKDKK
HRLEAVNTFSITQPVSGKHILLIDDVFTTGNTVSSVAWEILNAGNNKVSVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=564339 DYR29_RS11200 WP_213280528.1 2478766..2479419(+) (comF) [Chryseobacterium indologenes strain PgBE177]
ATGATATTAGATATATTATTTCCCAACCGTTGCATCCACTGCAACAGAATCATTGATCCTGAACTTTTGGTATGTGATCT
TTGTTTCAGCCAGATTTATTTTACCCACTATTCTTATTTTGAAAATAATCCGATCAAGGAAAAATGCAGTTTGTTTTTCC
CTGTTGAAAACACCTTTGCTTTACTGCAATTCGAAGAAGAAAGCTTAAGCCGACAGATCATCCATGAATTAAAATACAAA
AGCAGGGAAAAAGCAGGAAAGATCATTGCCAACTGGACAACAGAACGTCTGGACTTCAAAAATGAAAAGCCTGATCTTTT
GGTAAGTGTACCACTTCATCCAAAGAAGCTCAAGGAGCGCGGATATAACCAGCTTCATTTATTCACAGAAACTTTATCGG
CATTTTACGACATCCCTTTTGACCATCAATTAATCAAAAGAAATCATTATTCAAAAGCACAGGCTTTAAAAGATAAGAAA
CACAGATTGGAAGCTGTCAATACATTCTCTATTACACAACCGGTTTCAGGAAAGCACATTCTTCTGATTGATGACGTTTT
TACCACAGGAAATACCGTTTCATCGGTAGCATGGGAGATTTTAAATGCCGGAAATAATAAAGTGAGTGTACTGGTAATGG
CAATGGATGTTTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50.926

99.539

0.507