Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFQ18_RS14435 Genome accession   NZ_CP074356
Coordinates   2985262..2985891 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain XJ6.1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2980262..2990891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ18_RS14420 (KFQ18_14270) helD 2980504..2982558 (-) 2055 WP_275877706.1 DNA helicase IV -
  KFQ18_RS14425 (KFQ18_14275) yccF 2982681..2983127 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFQ18_RS14430 (KFQ18_14280) yccS 2983137..2985299 (+) 2163 WP_000875041.1 YccS family putative transporter -
  KFQ18_RS14435 (KFQ18_14285) sxy/tfoX 2985262..2985891 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFQ18_RS14440 (KFQ18_14290) sulA 2986110..2986619 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  KFQ18_RS14445 (KFQ18_14295) ompA 2986976..2988028 (+) 1053 WP_000750418.1 porin OmpA -
  KFQ18_RS14450 (KFQ18_14300) matP 2988104..2988556 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KFQ18_RS14455 (KFQ18_14305) ycbZ 2988742..2990502 (+) 1761 WP_275877284.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=564214 KFQ18_RS14435 WP_000839153.1 2985262..2985891(-) (sxy/tfoX) [Escherichia coli strain XJ6.1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=564214 KFQ18_RS14435 WP_000839153.1 2985262..2985891(-) (sxy/tfoX) [Escherichia coli strain XJ6.1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1