Detailed information NTG0056370

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BAM5036_RS07970
• Genome accession: NC_020410
• Coordinates: 1598166..1598945 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis UCMB5036
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1593166..1603945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAM5036_RS07950 (BAM5036_1533)	trmFO	1593853..1595160 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BAM5036_RS07955 (BAM5036_1534)	xerC	1595230..1596147 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
BAM5036_RS07960 (BAM5036_1535)	hslV	1596163..1596708 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
BAM5036_RS07965 (BAM5036_1536)	hslU	1596725..1598128 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
BAM5036_RS07970 (BAM5036_1537)	codY	1598166..1598945 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BAM5036_RS07975 (BAM5036_1538)	flgB	1599299..1599688 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
BAM5036_RS07980 (BAM5036_1539)	flgC	1599688..1600140 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
BAM5036_RS07985 (BAM5036_1540)	fliE	1600151..1600471 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BAM5036_RS07990 (BAM5036_1541)	fliF	1600514..1602124 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
BAM5036_RS07995 (BAM5036_1542)	fliG	1602137..1603153 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
BAM5036_RS08000 (BAM5036_1543)	fliH	1603146..1603901 (+)	756	WP_015417466.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=56370 BAM5036_RS07970 WP_003154263.1 1598166..1598945(+) (codY) [Bacillus velezensis UCMB5036]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=56370 BAM5036_RS07970 WP_003154263.1 1598166..1598945(+) (codY) [Bacillus velezensis UCMB5036]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTGAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471