Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BAM5036_RS07940 Genome accession   NC_020410
Coordinates   1590632..1591531 (+) Length   299 a.a.
NCBI ID   WP_015417465.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1585632..1596531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS07920 (BAM5036_1527) - 1586322..1588025 (+) 1704 WP_015417464.1 hypothetical protein -
  BAM5036_RS07925 (BAM5036_1528) - 1588022..1588303 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  BAM5036_RS07930 (BAM5036_1529) sucC 1588478..1589635 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  BAM5036_RS07935 (BAM5036_1530) sucD 1589664..1590566 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  BAM5036_RS07940 (BAM5036_1531) dprA 1590632..1591531 (+) 900 WP_015417465.1 DNA-processing protein DprA Machinery gene
  BAM5036_RS07945 (BAM5036_1532) topA 1591713..1593788 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  BAM5036_RS07950 (BAM5036_1533) trmFO 1593853..1595160 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BAM5036_RS07955 (BAM5036_1534) xerC 1595230..1596147 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32954.26 Da        Isoelectric Point: 8.4593

>NTDB_id=56369 BAM5036_RS07940 WP_015417465.1 1590632..1591531(+) (dprA) [Bacillus velezensis UCMB5036]
MDQASRCLMVCSINQIISPSLLLKWWKADHFLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPKLDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYMEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=56369 BAM5036_RS07940 WP_015417465.1 1590632..1591531(+) (dprA) [Bacillus velezensis UCMB5036]
TTGGATCAAGCATCGCGATGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTTTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGAAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATATGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706

Multiple sequence alignment