Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   L6503_RS00050 Genome accession   NZ_CP091770
Coordinates   5575..6750 (-) Length   391 a.a.
NCBI ID   WP_237775701.1    Uniprot ID   -
Organism   Helicobacter pylori strain K115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 575..11750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS00015 (L6503_00015) - 892..1206 (+) 315 WP_000867999.1 hypothetical protein -
  L6503_RS00020 (L6503_00020) - 1184..1960 (+) 777 WP_001916890.1 RNA polymerase sigma factor FliA -
  L6503_RS00025 (L6503_00025) fliM 1953..3017 (+) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  L6503_RS00030 (L6503_00030) fliY 3021..3884 (+) 864 WP_237775698.1 flagellar motor switch protein FliY -
  L6503_RS00035 (L6503_00035) - 3912..4448 (+) 537 WP_237775699.1 YhcH/YjgK/YiaL family protein -
  L6503_RS00040 (L6503_00040) - 4445..4942 (+) 498 WP_237775700.1 DUF2147 domain-containing protein -
  L6503_RS00045 (L6503_00045) fur 4962..5414 (-) 453 WP_000825001.1 ferric iron uptake transcriptional regulator -
  L6503_RS00050 (L6503_00050) rarA 5575..6750 (-) 1176 WP_237775701.1 replication-associated recombination protein A Machinery gene
  L6503_RS00055 (L6503_00055) - 6747..7118 (-) 372 WP_237775702.1 heat shock protein transcriptional repressor HspR -
  L6503_RS00060 (L6503_00060) - 7128..7994 (-) 867 WP_000045775.1 DnaJ C-terminal domain-containing protein -
  L6503_RS00065 (L6503_00065) - 8162..9412 (+) 1251 WP_237775703.1 outer membrane family protein -
  L6503_RS00070 (L6503_00070) - 9434..10300 (-) 867 WP_237776120.1 5'-3' exonuclease -
  L6503_RS00075 (L6503_00075) - 10525..11421 (-) 897 WP_237775704.1 response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43924.47 Da        Isoelectric Point: 7.8110

>NTDB_id=563418 L6503_RS00050 WP_237775701.1 5575..6750(-) (rarA) [Helicobacter pylori strain K115]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KFKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLNHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=563418 L6503_RS00050 WP_237775701.1 5575..6750(-) (rarA) [Helicobacter pylori strain K115]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAACATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCTCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAATTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCTTAA
ACCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAACTTTGCGCTAAA
GCTTTAACATTACTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTACAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTAGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.621

100

0.396