Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KFQ09_RS16460 Genome accession   NZ_CP074101
Coordinates   3227434..3229818 (+) Length   794 a.a.
NCBI ID   WP_060832472.1    Uniprot ID   -
Organism   Bacillus sp. FS02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3222434..3234818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ09_RS16440 cymR 3223905..3224324 (+) 420 WP_008342713.1 cysteine metabolism transcriptional regulator CymR -
  KFQ09_RS16445 - 3224343..3225485 (+) 1143 WP_025207703.1 cysteine desulfurase family protein -
  KFQ09_RS16450 mnmA 3225581..3226699 (+) 1119 WP_008342709.1 tRNA 2-thiouridine(34) synthase MnmA -
  KFQ09_RS16455 - 3226761..3227414 (+) 654 WP_008342707.1 tetratricopeptide repeat protein -
  KFQ09_RS16460 recD2 3227434..3229818 (+) 2385 WP_060832472.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KFQ09_RS16465 - 3230105..3230566 (+) 462 WP_046344105.1 PRC-barrel domain-containing protein -
  KFQ09_RS16470 - 3230580..3230771 (+) 192 WP_003216308.1 hypothetical protein -
  KFQ09_RS16475 - 3230792..3230923 (+) 132 WP_008342695.1 YrzQ family protein -
  KFQ09_RS16480 - 3230962..3231612 (-) 651 WP_017367699.1 amino acid ABC transporter permease -
  KFQ09_RS16485 - 3231628..3232281 (-) 654 WP_007501460.1 amino acid ABC transporter permease -
  KFQ09_RS16490 - 3232362..3233171 (-) 810 WP_017367698.1 transporter substrate-binding domain-containing protein -
  KFQ09_RS16495 - 3233186..3233914 (-) 729 WP_007501456.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 88930.31 Da        Isoelectric Point: 5.0580

>NTDB_id=563288 KFQ09_RS16460 WP_060832472.1 3227434..3229818(+) (recD2) [Bacillus sp. FS02]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGKLGNQTLHQIMRDPSVLYNVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQAYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIIETRKLLNQTGNDYKVTEMDVANQIIALGEGKDMIIEDDRCYHPSLFYAEQSVAKRIQKIVAQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPGDYKKDE
AFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEDQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAIPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSSDQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQQILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLTETEEVMDAELAALQKELPFSVHDANIGMEGITPFDFMQE

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=563288 KFQ09_RS16460 WP_060832472.1 3227434..3229818(+) (recD2) [Bacillus sp. FS02]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAAGACGAACCGTTTTTAAAAGGGACGGTTCAAGCTGTTATTTTCCATAA
CGAAAGTAATTTATACTCGGTGTTAAAAGTAAAAGTCATTGAAACATCAGAGAATTTAGAGGAAAAAACAGCATCTGTCA
CAGGGTACTTCCCAGCGCTGCATGAGGAGGAAACCTACACCTTCTATGGCAAGGTCACAAGTCATCCGAAGTTTGGTGAG
CAGTTTCAAGCCACCCATTTTCAAAAGGAAGTCCCTACAACAAAGCAAGGCATCATTCATTATCTCTCTAGTGACTTGTT
TGAAGGGATTGGGAAAAAGACGGCGGAAGAAATCGTCGGCAAGCTTGGCAATCAGACGCTTCATCAAATTATGCGTGATC
CGTCTGTGTTGTATAACGTCCCTCGCCTGTCAAAAAAGAAGGCAGATAAGCTGGCTGCCGCACTTCAAGAGCATCAAGGG
CTTGAGCAAATCATGATCAGCCTGAATCAATATGGTTTTGGTCCTCAGCTTAGTATGAAGATTTACCAAGCGTACGAGAG
TGAAACGTTGCAGAAAATTGAAGAAAACCCTTATCAGCTCGTCAAAGACGTCGAGGGGATTGGATTTATTAAAGCAGATG
AACTCGGCGCTAGAACAGGGATATCTGGAAATGATCCAGAACGCATTCGTGCAGCCCTTTTGTATACCGTTGAGACAGCA
AGCCTGCAAGACGGTCATACGTACATACAAACGAAAGATCTGATCATCGAAACCCGTAAATTGCTGAATCAAACCGGCAA
TGACTACAAAGTGACTGAAATGGACGTTGCCAATCAGATCATTGCACTTGGTGAAGGGAAAGACATGATCATTGAAGATG
ATCGCTGTTATCATCCGTCGCTCTTTTATGCGGAGCAAAGTGTGGCAAAACGTATTCAAAAAATTGTCGCTCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTTCTGCTTGCACTCGGTGAACTGGAGGAGCGGCTAGGTGTCCAGTATGCACC
GACTCAAAAAGAAGCCATTCAAAAGGCACTCATGTCCCCGATGCTGCTCTTAACAGGCGGACCGGGTACAGGGAAAACGA
CGGTCATTAAAGGGATTGTCGAGCTTTACAGCGATCTTCACGGCGTATCTCTTGACCCGGGTGATTATAAAAAAGATGAA
GCATTTCCGTTCGTGCTTGCCGCACCAACTGGACGTGCTGCGAAACGAATGACAGAATCCACTGGACTGCCTGCTGTGAC
CATTCACCGGCTGCTAGGCTGGAATGGATCAGAAGGCTTCTCACATGATGAAGACCAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCGAGTATGCTGGATATTTGGCTGGCGAACCATTTGTTTAAGGCGATCCCAGATCATATTCAAGTCATT
ATGGTTGGAGACGAACATCAACTTCCATCTGTCGGGCCTGGTCAAGTGTTAAGAGACCTGCTTGCGTCACAAGCTATACC
GGCAGTTACATTAACTGATATTTACCGGCAGGCAGACGGTTCAACAATTGTTGAGCTTGCGCACGATATGAAAAATGGTG
TTTTGCCAAAGGATATTACTGCACGCTCGAAGGATCGATCCTTTATTCAATGCTCTAGTGACCAAATGAAAGAAGTCATC
GAGAAAGTGGTCAGCAATGCTGCTCAAAAGGGTTATTCAGCAAAGGACATTCAAGTACTTGCCCCGATGTATAAAGGAAA
AGCAGGCATTAATGAACTGAATAAAATGCTCCAGCAAATTTTGAATCCTAAAAAGCCAAAAGGAAGAGAAATTCCATTTG
GTGATGTCGTCTACCGGACAGGTGATAAGGTACTTCAGCTTGTCAATCAGCCCGAGAATAACATTTTTAATGGAGATATT
GGAGAAATTGTCTCGATCTTTTATGCGAAAGAAAACACGGAAAAAGAAGATATGGCAGTCATCTCCTTTGATGGAAATGA
AATCACGTTTACGAAAAAAGATTTTCATCAATTTACACACGCTTATTGTTGCTCGATTCATAAATCCCAGGGCAGTGAAT
TCCCAATCGTGGTGCTGCCAGTCGTGAGAAGTTATTATCGAATGCTTCGAAGAAATTTGCTTTACACGGCCATTACACGA
AGTAAAAAGTTTTTAATTTTGTGCGGTGAGGAATCAGCATTAGAGTGGGGCGTGAAAAATAATGAAGACTCCCTCAGACA
AACGTCTTTAACTATGCGTCTTACTGAAACGGAAGAAGTCATGGATGCTGAGCTAGCAGCCCTCCAAAAAGAACTTCCTT
TCAGCGTACACGATGCCAATATTGGCATGGAGGGAATCACCCCGTTTGATTTTATGCAAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-659)

AAA domain (AAA_30)

(345-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

80.252

100

0.804