Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KFQ09_RS01745 Genome accession   NZ_CP074101
Coordinates   342708..343487 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FS02     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 337708..348487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ09_RS01715 fliH 337821..338585 (-) 765 WP_008344806.1 flagellar assembly protein FliH -
  KFQ09_RS01720 fliG 338578..339594 (-) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  KFQ09_RS01725 fliF 339606..341198 (-) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  KFQ09_RS01730 fliE 341249..341566 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  KFQ09_RS01735 flgC 341578..342030 (-) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  KFQ09_RS01740 flgB 342030..342419 (-) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  KFQ09_RS01745 codY 342708..343487 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KFQ09_RS01750 hslU 343522..344922 (-) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  KFQ09_RS01755 hslV 344939..345484 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  KFQ09_RS01760 xerC 345499..346416 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  KFQ09_RS01765 trmFO 346479..347783 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=563241 KFQ09_RS01745 WP_007499612.1 342708..343487(-) (codY) [Bacillus sp. FS02]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=563241 KFQ09_RS01745 WP_007499612.1 342708..343487(-) (codY) [Bacillus sp. FS02]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGCAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471