Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SAJPND4_RS05990 Genome accession   NZ_AP014653
Coordinates   1220330..1221103 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain TMUS2134     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215330..1226103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAJPND4_RS05970 (SAJPND4_01183) trmFO 1215674..1216981 (+) 1308 WP_000195258.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SAJPND4_RS05975 (SAJPND4_01184) xerC 1217398..1218294 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  SAJPND4_RS05980 (SAJPND4_01185) hslV 1218291..1218836 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SAJPND4_RS05985 (SAJPND4_01186) hslU 1218902..1220305 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SAJPND4_RS05990 (SAJPND4_01187) codY 1220330..1221103 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SAJPND4_RS05995 - 1221154..1221246 (+) 93 WP_031788481.1 hypothetical protein -
  SAJPND4_RS06000 (SAJPND4_01188) rpsB 1221445..1222212 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SAJPND4_RS06005 - 1222246..1222359 (+) 114 WP_001789890.1 hypothetical protein -
  SAJPND4_RS06010 (SAJPND4_01189) tsf 1222394..1223275 (+) 882 WP_000201387.1 translation elongation factor Ts -
  SAJPND4_RS06015 (SAJPND4_01190) pyrH 1223412..1224134 (+) 723 WP_000057330.1 UMP kinase -
  SAJPND4_RS06020 (SAJPND4_01191) frr 1224153..1224707 (+) 555 WP_001280006.1 ribosome recycling factor -
  SAJPND4_RS06025 (SAJPND4_01192) - 1225080..1225850 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=56321 SAJPND4_RS05990 WP_000055337.1 1220330..1221103(+) (codY) [Staphylococcus aureus strain TMUS2134]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=56321 SAJPND4_RS05990 WP_000055337.1 1220330..1221103(+) (codY) [Staphylococcus aureus strain TMUS2134]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGATAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment